Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.8e-160 567.4 311 100.0
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 9.7e-82 307.8 294 65.0
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.5e-71 272.3 278 60.4
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.6e-47 194.1 151 70.9
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-29 134.8 324 38.0
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.4e-27 127.1 181 51.9
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.2e-25 120.6 330 36.7
AL6G21220 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.4e-24 117.1 146 53.4
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 5.3e-19 99.4 323 34.4
AT1G56100 Arabidopsis thaliana HOM05D007968 ORTHO05D010203 6.9e-19 99.0 223 40.8
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 1.9e-16 90.9 86 52.3
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.2e-15 88.2 145 40.0
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 5.1e-14 82.8 105 42.9
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 5.1e-14 82.8 86 48.8
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 6.7e-14 82.4 88 50.0
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 8.7e-14 82.0 88 42.0
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.1e-13 81.6 86 48.8
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.5e-13 80.5 86 47.7
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 3.3e-13 80.1 77 50.6
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 4.3e-13 79.7 86 45.3
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 7.4e-13 79.0 86 47.7
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 7.4e-13 79.0 235 28.5
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.6e-12 77.8 85 41.2
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 2.1e-12 77.4 88 44.3
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.8e-12 77.0 345 31.0
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 3.7e-12 76.6 90 44.4
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 3.7e-12 76.6 93 44.1
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 6.2e-12 75.9 348 29.0
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 6.2e-12 75.9 88 43.2
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.1e-11 75.1 90 43.3
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.4e-11 74.7 78 46.2
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.8e-11 74.3 86 41.9
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 2.4e-11 73.9 88 44.3
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 2.4e-11 73.9 83 47.0
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 3.1e-11 73.6 85 45.9
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 3.1e-11 73.6 83 43.4
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 5.3e-11 72.8 76 46.1
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 9.0e-11 72.0 75 45.3
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 9.0e-11 72.0 161 31.7
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 9.0e-11 72.0 82 41.5
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 9.0e-11 72.0 89 42.7
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.2e-10 71.6 356 27.0
AL8G32350 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.5e-10 71.2 58 69.0
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.0e-10 70.9 366 29.0
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 2.0e-10 70.9 100 39.0
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 2.0e-10 70.9 100 39.0
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.0e-10 70.9 93 40.9
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.4e-10 70.1 306 28.1
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 4.5e-10 69.7 234 29.1
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 5.8e-10 69.3 85 44.7
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 7.6e-10 68.9 86 43.0
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.6e-10 68.9 70 45.7
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.6e-10 68.9 70 45.7
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 7.6e-10 68.9 88 39.8
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.0e-09 68.6 77 40.3
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.9e-09 67.0 223 26.9
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.9e-09 66.2 191 28.8
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 4.9e-09 66.2 67 47.8
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.5e-09 65.9 77 40.3
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.1e-08 65.1 78 37.2
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.4e-08 64.7 151 32.5
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 1.9e-08 64.3 284 27.1
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.9e-08 64.3 82 36.6
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.5e-08 63.9 77 40.3
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.5e-08 63.9 101 35.6
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 3.2e-08 63.5 285 27.7
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.2e-08 63.5 77 44.2
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 4.2e-08 63.2 286 28.0
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 4.2e-08 63.2 77 40.3
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 5.5e-08 62.8 282 28.7
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 5.5e-08 62.8 282 28.7
CARHR174360 Cardamine hirsuta HOM05D005863 ORTHO05D003355 7.1e-08 62.4 50 58.0
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 7.1e-08 62.4 82 36.6
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 7.1e-08 62.4 82 36.6
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 1.2e-07 61.6 283 25.4
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 1.2e-07 61.6 283 25.4
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 1.2e-07 61.6 283 25.4
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 1.6e-07 61.2 72 40.3
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 2.7e-07 60.5 248 27.4
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 7.9e-07 58.9 84 41.7
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.9e-07 58.9 263 30.0
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 1.3e-06 58.2 275 28.7
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.3e-06 57.4 98 34.7
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 2.3e-06 57.4 77 35.1
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 3.0e-06 57.0 300 24.7
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 3.0e-06 57.0 84 35.7
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 6.7e-06 55.8 134 32.8
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 6.7e-06 55.8 213 28.6
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 8.7e-06 55.5 91 37.4
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 8.7e-06 55.5 265 29.1


User provided reference genes

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