Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.5e-186 656.0 328 100.0
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 4.1e-163 578.2 320 90.9
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.4e-155 552.4 329 86.3
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 7.7e-154 547.4 327 83.5
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.8e-150 536.2 316 85.8
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 5.7e-149 531.2 319 83.7
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.3e-148 530.0 329 80.9
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 2.2e-148 529.3 329 81.5
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 4.8e-148 528.1 329 81.2
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.4e-147 526.6 329 80.9
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 5.9e-146 521.2 341 78.0
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 1.0e-142 510.4 331 80.4
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 3.1e-139 498.8 319 79.0
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 4.4e-125 451.8 316 71.2
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 9.8e-125 450.7 325 69.5
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 6.4e-124 448.0 320 70.0
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 6.4e-124 448.0 321 71.0
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 8.3e-124 447.6 321 71.3
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.2e-122 443.7 324 68.2
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 2.7e-122 442.6 320 68.1
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.5e-122 442.2 324 67.9
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 4.6e-122 441.8 321 68.5
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 7.8e-122 441.0 315 68.6
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.0e-121 440.7 326 66.6
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 3.9e-121 438.7 318 68.9
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.9e-121 438.7 315 68.3
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 3.9e-121 438.7 314 69.4
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.0e-121 438.3 315 67.9
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 5.0e-121 438.3 318 67.3
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 6.6e-121 438.0 321 68.2
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.6e-121 438.0 315 68.3
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 8.6e-121 437.6 315 68.9
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 1.1e-120 437.2 323 66.9
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.9e-120 436.4 318 67.9
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 3.3e-120 435.6 320 68.1
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 4.3e-120 435.3 320 66.2
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.6e-120 434.9 315 67.6
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 9.5e-120 434.1 321 67.0
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 2.1e-119 433.0 239 90.8
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.8e-119 432.6 315 67.6
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 6.2e-119 431.4 317 69.4
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 6.2e-119 431.4 320 66.9
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 8.1e-119 431.0 316 68.7
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.8e-118 429.9 315 65.7
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 2.3e-118 429.5 328 66.8
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 4.0e-118 428.7 317 68.8
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 5.2e-118 428.3 324 65.1
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 5.2e-118 428.3 315 65.4
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 6.8e-118 427.9 324 65.1
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 6.8e-118 427.9 322 66.5
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 2.0e-117 426.4 318 66.7
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 2.0e-117 426.4 315 65.7
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 2.0e-117 426.4 320 66.6
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 9.8e-117 424.1 317 65.0
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 9.8e-117 424.1 317 69.1
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 9.8e-117 424.1 328 65.9
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-116 423.3 317 67.2
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 2.2e-116 422.9 320 64.4
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 2.2e-116 422.9 320 68.4
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 3.7e-116 422.2 312 66.7
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 4.9e-116 421.8 315 66.7
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 4.9e-116 421.8 317 65.9
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 6.4e-116 421.4 318 65.4
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 6.4e-116 421.4 321 68.2
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 6.4e-116 421.4 317 65.9
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 8.3e-116 421.0 320 68.8
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 1.4e-115 420.2 324 64.8
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.9e-115 419.9 322 65.8
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 2.4e-115 419.5 319 64.6
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 3.2e-115 419.1 313 66.8
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 4.1e-115 418.7 359 60.4
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 5.4e-115 418.3 315 64.8
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 7.1e-115 417.9 317 65.3
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 9.2e-115 417.5 325 64.6
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 2.7e-114 416.0 315 65.4
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 2.7e-114 416.0 321 63.2
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 4.6e-114 415.2 344 61.9
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.3e-113 413.7 318 64.5
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.7e-113 413.3 321 64.8
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.9e-113 412.1 315 64.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 8.6e-113 411.0 322 62.7
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 1.1e-112 410.6 323 65.0
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 3.6e-111 405.6 309 65.0
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 8.9e-110 401.0 374 55.3
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 2.0e-109 399.8 314 64.3
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 2.0e-109 399.8 321 62.3
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 3.4e-109 399.1 343 59.2
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 5.8e-109 398.3 314 63.4
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 2.4e-107 392.9 320 61.6
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.6e-106 388.7 292 65.8
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 8.6e-105 384.4 279 68.5
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 7.3e-104 381.3 320 61.6
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 6.2e-103 378.3 319 60.8
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 3.1e-102 375.9 312 59.6
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 6.8e-102 374.8 259 70.3
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 6.8e-102 374.8 320 58.4
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.9e-100 369.4 279 65.6
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.2e-98 364.0 277 66.4
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 3.5e-98 362.5 296 61.5
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 5.6e-96 355.1 244 70.9
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 7.3e-96 354.8 245 70.2
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 5.4e-91 338.6 230 72.2
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.5e-88 330.5 320 52.5
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 3.6e-87 325.9 317 52.1
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 5.5e-83 312.0 233 66.5
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-82 309.3 239 64.9
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.8e-81 307.0 312 52.9
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.3e-81 306.6 225 67.1
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.1e-75 287.7 243 60.1
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.2e-75 285.8 236 61.9
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 7.1e-75 285.0 244 62.7
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 3.0e-73 279.6 241 59.3
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 2.3e-65 253.4 190 65.3
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 7.4e-64 248.4 305 44.3
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 2.2e-55 220.3 189 58.2
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 3.1e-54 216.5 191 59.7
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.3e-47 194.5 312 38.8
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 9.1e-46 188.3 326 40.8
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 7.7e-45 185.3 132 66.7
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 4.8e-39 166.0 325 37.8
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 7.7e-37 158.7 117 70.1
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 6.5e-36 155.6 127 56.7
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.3e-33 147.1 108 65.7
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 2.2e-31 140.6 125 56.8
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 3.1e-30 136.7 129 56.6
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 1.6e-29 134.4 112 56.2
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 1.6e-29 134.4 112 56.2
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 1.6e-29 134.4 112 56.2
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 5.2e-25 119.4 81 71.6
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.2e-24 118.2 90 64.4
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 3.7e-23 113.2 98 56.1
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 4.9e-23 112.8 80 70.0
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.1e-14 85.1 83 54.2
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-13 80.1 74 56.8
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-12 78.6 54 68.5
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 2.8e-10 70.5 57 54.4
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-08 64.7 60 58.3
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-08 64.7 60 58.3
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 4.1e-06 56.6 91 40.7


User provided reference genes

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