Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 3.1e-149 531.9 303 100.0
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 1.1e-119 433.7 305 86.9
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 3.4e-87 325.9 317 61.5
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 1.5e-82 310.5 315 61.6
Carub.0006s3693 Capsella rubella HOM05D012121 ORTHO05D005694 2.8e-81 306.2 309 64.4
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 4.9e-78 295.4 314 57.6
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 1.9e-74 283.5 317 56.2
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 5.2e-72 275.4 320 55.0
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 5.2e-72 275.4 320 55.0
C09p00270 Brassica napus HOM05D012121 ORTHO05D005694 2.6e-71 273.1 320 54.7
BraA09t35701Z Brassica rapa HOM05D012121 ORTHO05D005694 4.6e-68 262.3 320 60.3
A09p00590 Brassica napus HOM05D012121 ORTHO05D005694 9.5e-66 254.6 320 59.4
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 2.9e-46 189.9 316 43.0
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 1.8e-24 117.5 127 57.5
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 5.7e-18 95.9 335 31.6
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 4.8e-17 92.8 223 35.4
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 1.4e-16 91.3 310 34.2
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 6.9e-16 89.0 351 29.6
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 1.5e-15 87.8 225 33.8
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 4.5e-15 86.3 341 29.3
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.0e-14 85.1 328 32.0
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 2.9e-14 83.6 335 31.0
Aa31LG5G640 Aethionema arabicum HOM05D012121 ORTHO05D005694 6.5e-14 82.4 67 65.7
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 1.1e-13 81.6 345 30.1
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 7.2e-13 79.0 340 30.6
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 9.4e-13 78.6 335 29.6
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-12 78.2 321 28.3
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 4.7e-12 76.3 331 27.8
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 1.0e-11 75.1 359 28.4
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.8e-11 74.3 340 27.6
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.0e-11 73.6 329 28.6
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 3.0e-11 73.6 255 30.6
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 3.9e-11 73.2 208 30.8
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 3.9e-11 73.2 337 25.5
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 5.1e-11 72.8 320 29.7
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 8.8e-11 72.0 222 34.2
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 2.0e-10 70.9 315 27.6
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 2.0e-10 70.9 338 27.2
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 2.6e-10 70.5 325 29.8
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 5.7e-10 69.3 336 29.2
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 7.4e-10 68.9 345 27.8
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 7.4e-10 68.9 348 27.6
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 9.7e-10 68.6 323 28.5
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 2.2e-09 67.4 212 32.1
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 2.8e-09 67.0 313 28.1
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 3.7e-09 66.6 356 31.5
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 6.3e-09 65.9 313 26.2
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 6.3e-09 65.9 321 27.7
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 1.1e-08 65.1 323 28.2
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 1.4e-08 64.7 229 31.9
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 1.4e-08 64.7 238 30.7
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.4e-08 63.9 322 26.4
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 3.1e-08 63.5 252 29.8
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.1e-08 63.5 229 31.4
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 3.1e-08 63.5 215 33.0
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 3.1e-08 63.5 339 25.7
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.1e-08 63.2 311 26.7
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.1e-08 63.2 335 29.9
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 4.1e-08 63.2 305 30.8
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 7.0e-08 62.4 235 28.5
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 1.5e-07 61.2 316 34.8
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.5e-07 61.2 335 31.0
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.5e-07 61.2 314 26.8
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 3.4e-07 60.1 241 28.6
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.9e-07 59.3 335 29.6
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 5.9e-07 59.3 224 28.6
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 5.9e-07 59.3 326 28.5
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 5.9e-07 59.3 324 29.3
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 5.9e-07 59.3 339 27.4
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.9e-06 57.0 354 26.8
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 2.9e-06 57.0 333 24.9
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 3.8e-06 56.6 331 25.1
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 5.0e-06 56.2 340 23.5
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 6.5e-06 55.8 331 26.9


User provided reference genes

Program Settings