Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00140 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 1.0e-137 493.4 258 100.0
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 2.4e-33 146.7 244 48.0
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 2.5e-30 136.7 238 44.5
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 2.6e-19 100.1 236 36.4
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 2.8e-18 96.7 215 37.2
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 8.2e-18 95.1 160 45.6
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 1.6e-16 90.9 224 37.1
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 8.0e-13 78.6 241 31.5
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 8.0e-13 78.6 237 32.9
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 8.0e-13 78.6 237 32.9
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 5.2e-12 75.9 108 46.3
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 5.7e-11 72.4 235 30.6
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 1.3e-10 71.2 231 31.6
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 1.3e-10 71.2 231 31.6
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 4.8e-10 69.3 243 28.4
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 1.6e-08 64.3 44 63.6
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 3.5e-08 63.2 266 27.8
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 4.5e-08 62.8 99 38.4
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 1.0e-07 61.6 99 40.4
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 1.3e-07 61.2 45 60.0
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 1.7e-07 60.8 43 60.5
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 1.7e-07 60.8 43 62.8
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 2.2e-07 60.5 249 26.9
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 3.8e-07 59.7 43 60.5
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 3.8e-07 59.7 43 60.5
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 3.8e-07 59.7 43 58.1
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 5.0e-07 59.3 164 32.3
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 5.0e-07 59.3 43 62.8
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 6.5e-07 58.9 91 39.6
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 6.5e-07 58.9 43 55.8
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 6.5e-07 58.9 45 57.8
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 6.5e-07 58.9 43 60.5
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 6.5e-07 58.9 103 35.9
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 8.5e-07 58.5 43 62.8
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 1.1e-06 58.2 41 65.9
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 1.1e-06 58.2 43 60.5
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 1.1e-06 58.2 43 58.1
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 1.5e-06 57.8 97 40.2
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 1.5e-06 57.8 43 55.8
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 1.9e-06 57.4 102 39.2
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 1.9e-06 57.4 40 62.5
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 1.9e-06 57.4 65 47.7
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 1.9e-06 57.4 43 55.8
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 1.9e-06 57.4 43 55.8
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 2.5e-06 57.0 40 57.5
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 2.5e-06 57.0 43 67.4
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 3.2e-06 56.6 102 37.3
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 3.2e-06 56.6 43 55.8
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 3.2e-06 56.6 43 55.8
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 4.2e-06 56.2 136 34.6
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 4.2e-06 56.2 232 25.9
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 5.5e-06 55.8 94 42.6
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 5.5e-06 55.8 103 36.9
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 9.4e-06 55.1 43 53.5


User provided reference genes

Program Settings