Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 4.4e-118 427.9 213 100.0
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 1.4e-103 379.8 209 90.0
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 1.4e-100 369.8 209 88.5
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.4e-92 343.2 207 83.1
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.2e-91 340.1 207 83.6
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 5.6e-89 331.3 231 74.9
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 3.7e-88 328.6 209 79.9
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 4.8e-88 328.2 209 79.4
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 4.8e-88 328.2 209 79.4
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 9.0e-87 323.9 209 78.9
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 9.0e-87 323.9 209 78.9
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.6e-80 303.1 209 70.8
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.2e-78 297.0 185 75.7
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 2.2e-77 292.7 187 73.8
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 3.8e-77 292.0 187 73.3
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 5.0e-77 291.6 187 72.7
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 5.0e-77 291.6 187 73.8
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 4.2e-76 288.5 187 72.7
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 4.2e-76 288.5 187 72.7
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 4.2e-76 288.5 187 72.2
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 4.2e-76 288.5 187 72.2
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 7.2e-76 287.7 187 71.7
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 9.3e-76 287.3 186 73.1
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 9.3e-76 287.3 187 71.7
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.6e-75 286.6 209 67.0
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 2.1e-75 286.2 187 72.2
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.0e-74 283.9 176 75.6
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 3.0e-74 282.3 187 71.7
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 3.0e-74 282.3 209 65.6
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 5.1e-74 281.6 174 76.4
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 5.1e-74 281.6 187 70.6
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 1.1e-73 280.4 208 65.9
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 3.3e-73 278.9 187 70.1
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 4.3e-73 278.5 187 70.1
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 4.3e-73 278.5 209 66.0
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 5.7e-73 278.1 177 74.0
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 7.4e-73 277.7 174 74.7
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 9.7e-73 277.3 187 71.7
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.3e-72 276.9 223 64.6
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 1.3e-72 276.9 207 65.2
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 1.3e-72 276.9 208 64.4
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 1.6e-72 276.6 186 71.5
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 2.2e-72 276.2 187 67.4
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.2e-72 276.2 187 67.4
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.2e-72 276.2 187 67.4
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 2.2e-72 276.2 185 69.7
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 3.7e-72 275.4 210 62.9
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 3.7e-72 275.4 211 65.4
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 6.3e-72 274.6 179 70.4
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 1.1e-71 273.9 174 71.3
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 1.8e-71 273.1 209 64.1
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 2.4e-71 272.7 186 68.8
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 3.1e-71 272.3 183 68.3
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 3.1e-71 272.3 174 70.7
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 3.1e-71 272.3 174 73.6
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 6.9e-71 271.2 174 72.4
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.2e-70 270.4 189 67.7
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 2.0e-70 269.6 199 66.8
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 2.0e-70 269.6 186 69.4
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 3.4e-70 268.9 177 71.2
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 4.5e-70 268.5 183 68.3
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 5.9e-70 268.1 195 66.2
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 5.9e-70 268.1 177 71.2
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.0e-69 267.3 183 67.2
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.3e-69 266.9 199 65.8
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 1.7e-69 266.5 191 66.0
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 2.9e-69 265.8 174 70.1
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.1e-68 263.8 191 65.4
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 2.5e-68 262.7 177 69.5
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.7e-67 259.2 198 65.2
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 3.6e-67 258.8 175 67.4
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 4.6e-67 258.5 179 68.7
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 1.0e-66 257.3 174 69.0
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 2.3e-66 256.1 176 69.3
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 5.1e-66 255.0 184 66.3
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 8.8e-66 254.2 231 55.4
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 2.5e-65 252.7 174 69.0
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 7.4e-65 251.1 140 82.9
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 9.7e-65 250.8 178 68.5
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 4.1e-63 245.4 143 77.6
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 2.9e-61 239.2 140 78.6
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 7.2e-60 234.6 153 82.4
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 8.8e-58 227.6 171 60.8
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 4.4e-57 225.3 171 60.2
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 5.7e-57 224.9 174 60.3
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 1.3e-56 223.8 215 55.8
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 1.3e-56 223.8 156 66.0
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 2.8e-56 222.6 179 64.2
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 3.7e-56 222.2 173 60.1
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 6.3e-56 221.5 187 60.4
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 1.1e-55 220.7 173 59.0
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.8e-55 219.9 175 65.7
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 3.5e-54 215.7 153 68.0
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 5.0e-53 211.8 151 66.9
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 8.5e-53 211.1 179 58.1
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 2.1e-51 206.5 163 61.3
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 4.5e-46 188.7 222 50.9
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 6.1e-43 178.3 133 68.4
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 1.5e-41 173.7 122 68.0
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 1.3e-40 170.6 120 70.8
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 1.4e-39 167.2 180 48.3
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 2.9e-37 159.5 174 49.4
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 1.6e-35 153.7 85 81.2
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 4.7e-35 152.1 85 80.0
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 1.8e-34 150.2 133 56.4
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 1.8e-34 150.2 169 47.9
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 1.2e-30 137.5 247 37.2
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 1.1e-28 131.0 128 63.3
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 2.0e-25 120.2 177 40.7
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 1.0e-21 107.8 113 52.2
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 1.5e-20 104.0 54 75.9
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 5.6e-20 102.1 88 59.1
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 6.8e-18 95.1 63 74.6
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.0e-17 93.6 81 55.6
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 4.9e-16 89.0 65 70.8
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 1.1e-10 71.2 213 31.5
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 1.3e-08 64.3 200 28.5
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 1.3e-08 64.3 54 57.4
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.9e-08 63.2 33 75.8
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 6.4e-08 62.0 191 27.2
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 6.4e-08 62.0 185 27.0
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 8.3e-08 61.6 184 28.8
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 1.1e-07 61.2 185 28.1
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 1.1e-07 61.2 188 27.1
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 1.4e-07 60.8 32 78.1
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 1.9e-07 60.5 196 26.0
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 4.1e-07 59.3 138 30.4
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 5.4e-07 58.9 187 25.7
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 7.1e-07 58.5 185 27.6
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 7.1e-07 58.5 191 25.1
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 7.1e-07 58.5 198 25.3
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 9.2e-07 58.2 185 27.0
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 1.2e-06 57.8 184 26.1
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 1.6e-06 57.4 185 28.6
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 3.5e-06 56.2 185 27.6
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 4.6e-06 55.8 190 25.3
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 6.0e-06 55.5 184 25.5
Hma1.2p1_0006F.1_g004880 Hydrangea macrophylla HOM05D005663 ORTHO05D007258 7.8e-06 55.1 190 27.4


User provided reference genes

Program Settings