Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G63390 Arabidopsis thaliana HOM05D007181 ORTHO05D008722 2.0e-87 325.9 176 100.0
AL5G46250 Arabidopsis lyrata HOM05D007181 ORTHO05D008722 8.3e-70 267.3 172 84.3
Carub.0005s3001 Capsella rubella HOM05D007181 ORTHO05D008722 4.9e-54 214.9 171 65.5
BraA09t40915Z Brassica rapa HOM05D007181 ORTHO05D008722 6.4e-54 214.5 176 65.3
C08p38020 Brassica napus HOM05D007181 ORTHO05D008722 8.3e-54 214.2 176 64.8
BolC8t51376H Brassica oleracea HOM05D007181 ORTHO05D008722 8.3e-54 214.2 176 64.8
BcaC07g40807 Brassica carinata HOM05D007181 ORTHO05D008722 3.2e-53 212.2 176 64.2
A09p55080 Brassica napus HOM05D007181 ORTHO05D008722 3.5e-52 208.8 177 63.3
CARHR291580 Cardamine hirsuta HOM05D007181 ORTHO05D008722 1.0e-51 207.2 174 74.7
Sp5g00160 Schrenkiella parvula HOM05D007181 ORTHO05D008722 5.0e-51 204.9 173 67.6
BcaB03g13697 Brassica carinata HOM05D007181 ORTHO05D008722 1.6e-49 199.9 177 67.2
Aa31LG10G17220 Aethionema arabicum HOM05D007181 ORTHO05D008722 1.7e-46 189.9 195 63.6
Thhalv10006272m.g Eutrema salsugineum HOM05D007181 ORTHO05D008722 8.3e-46 187.6 148 68.9
THA.LOC104817569 Tarenaya hassleriana HOM05D007181 ORTHO05D008722 2.7e-44 182.6 186 63.4
Cpa.g.sc52.129 Carica papaya HOM05D007181 ORTHO05D008722 7.5e-39 164.5 164 62.2
Duzib211G0516 Durio zibethinus HOM05D007181 ORTHO05D008722 5.4e-37 158.3 165 61.2
Thecc.01G270500 Theobroma cacao HOM05D007181 ORTHO05D008722 2.3e-35 152.9 163 55.8
Gorai.007G100900 Gossypium raimondii HOM05D007181 ORTHO05D008722 6.6e-35 151.4 177 52.0
Atru.chr5.1530 Acer truncatum HOM05D007181 ORTHO05D008722 1.5e-34 150.2 163 61.3
Gohir.D11G094500 Gossypium hirsutum HOM05D007181 ORTHO05D008722 1.5e-34 150.2 177 52.5
COL.COLO4_09179 Corchorus olitorius HOM05D007181 ORTHO05D008722 5.6e-34 148.3 178 55.1
Potri.002G047400 Populus trichocarpa HOM05D007181 ORTHO05D008722 5.6e-34 148.3 164 47.6
Gorai.004G217700 Gossypium raimondii HOM05D007181 ORTHO05D008722 2.8e-33 146.0 178 47.2
Ciclev10022317m.g Citrus clementina HOM05D007181 ORTHO05D008722 4.7e-33 145.2 160 55.0
Gohir.A05G078500 Gossypium hirsutum HOM05D000144 ORTHO05D008722 6.8e-32 141.4 177 42.9
Gohir.D08G205700 Gossypium hirsutum HOM05D007181 ORTHO05D008722 8.9e-32 141.0 167 48.5
Sabra02G0038300 Salix brachista HOM05D007181 ORTHO05D008722 8.9e-32 141.0 172 46.5
Prupe.8G234100 Prunus persica HOM05D007181 ORTHO05D008722 1.2e-31 140.6 161 54.0
Manes.05G082200 Manihot esculenta HOM05D007181 ORTHO05D008722 2.6e-31 139.4 163 57.7
Gohir.A11G090066 Gossypium hirsutum HOM05D007181 ORTHO05D008722 2.2e-30 136.3 171 50.3
BcaC07g42693 Brassica carinata HOM05D007181 ORTHO05D008722 3.8e-30 135.6 172 47.7
CSS0010421 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 4.9e-30 135.2 170 45.3
Gohir.A08G187400 Gossypium hirsutum HOM05D007181 ORTHO05D008722 4.9e-30 135.2 177 49.2
Haze_04637 Corylus avellana HOM05D000129 ORTHO05D000144 8.4e-30 134.4 177 47.5
CiPaw.08G110300 Carya illinoinensis HOM05D007181 ORTHO05D008722 1.4e-29 133.7 163 52.8
Haze_04636 Corylus avellana HOM05D007181 ORTHO05D008722 1.9e-29 133.3 177 47.5
Lj1g0009574 Lotus japonicus HOM05D007181 ORTHO05D008722 1.9e-29 133.3 157 43.3
FvH4_2g22890 Fragaria vesca HOM05D007181 ORTHO05D008722 3.2e-29 132.5 162 50.0
CSS0018066 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 7.1e-29 131.3 170 44.7
Phvul.001G155300 Phaseolus vulgaris HOM05D007181 ORTHO05D008722 7.1e-29 131.3 187 47.6
arahy.Tifrunner.gnm1.ann1.M9RGYA Arachis hypogaea HOM05D007181 ORTHO05D008722 1.2e-28 130.6 175 41.7
RcHm_v2.0_Chr6g0289821 Rosa chinensis HOM05D007181 ORTHO05D008722 1.6e-28 130.2 164 43.3
Glyma.19G160000 Glycine max HOM05D007181 ORTHO05D008722 2.7e-28 129.4 179 52.0
VMungo1383G2224 Vigna mungo HOM05D007181 ORTHO05D008722 2.7e-28 129.4 187 48.7
MD03G1257200 Malus domestica HOM05D007181 ORTHO05D008722 3.5e-28 129.0 161 55.3
Sed0014767 Sechium edule HOM05D007181 ORTHO05D008722 4.6e-28 128.6 173 52.6
Dinv32881 Davidia involucrata HOM05D007181 ORTHO05D008722 7.8e-28 127.9 142 59.9
QL12p042395 Quercus lobata HOM05D007181 ORTHO05D008722 7.8e-28 127.9 171 53.8
Nn8g40634 Nelumbo nucifera HOM05D007181 ORTHO05D008722 1.0e-27 127.5 155 49.7
Nn8g40635 Nelumbo nucifera HOM05D007181 ORTHO05D008722 1.0e-27 127.5 155 49.7
Hma1.2p1_0760F.1_g214120 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 3.0e-27 125.9 172 42.4
SGA_v2.0_scaffold1G00542 Striga asiatica HOM05D007181 ORTHO05D008722 8.7e-27 124.4 163 53.4
CANSAT25G0029 Cannabis sativa HOM05D007181 ORTHO05D008722 1.5e-26 123.6 167 40.1
CDE06G2554 Ceratophyllum demersum HOM05D007181 ORTHO05D008722 1.5e-26 123.6 137 51.1
Actinidia19968 Actinidia chinensis HOM05D007181 ORTHO05D008722 1.2e-25 120.6 140 45.0
MBI13_g01691_MAGBIO Magnolia biondii HOM05D007181 ORTHO05D008722 1.6e-25 120.2 156 46.2
GSVIVG01003131001 Vitis vinifera HOM05D007181 ORTHO05D008722 2.8e-25 119.4 158 50.6
AUR62032277 Chenopodium quinoa HOM05D007181 ORTHO05D008722 6.2e-25 118.2 154 40.3
MELO3C001156.2 Cucumis melo HOM05D007181 ORTHO05D008722 1.1e-24 117.5 103 52.4
Lsat_1_v5_gn_5_185100 Lactuca sativa HOM05D007181 ORTHO05D008722 1.4e-24 117.1 136 50.7
PGSC0003DMG400004278 Solanum tuberosum HOM05D007181 ORTHO05D008722 1.8e-24 116.7 167 38.9
TPR.G19095 Trifolium pratense HOM05D007181 ORTHO05D008722 1.8e-24 116.7 100 53.0
HPP92_028259 Vanilla planifolia HOM05D007181 ORTHO05D008722 3.1e-24 115.9 145 43.4
Nitab4.5_0003555g0080 Nicotiana tabacum HOM05D007181 ORTHO05D008722 4.0e-24 115.5 167 41.9
Oeu025775.1 Olea europaea HOM05D007181 ORTHO05D008722 4.0e-24 115.5 106 51.9
ClCG07G000510 Citrullus lanatus HOM05D007181 ORTHO05D008722 5.2e-24 115.2 154 51.9
Cc00_g18800 Coffea canephora HOM05D007181 ORTHO05D008722 5.2e-24 115.2 163 50.3
CsaV3_2G013840 Cucumis sativus L. HOM05D007181 ORTHO05D008722 5.2e-24 115.2 101 51.5
Aqoxy7G04176 Aquilegia oxysepala HOM05D007181 ORTHO05D008722 6.9e-24 114.8 141 41.1
Medtr7g095740 Medicago truncatula HOM05D007181 ORTHO05D008722 6.9e-24 114.8 103 50.5
SalBow4G0298 Salvia bowleyana HOM05D007181 ORTHO05D008722 6.9e-24 114.8 132 57.6
SalBow4G3342 Salvia bowleyana HOM05D007181 ORTHO05D008722 6.9e-24 114.8 132 57.6
SalBow6G6987 Salvia bowleyana HOM05D007181 ORTHO05D008722 6.9e-24 114.8 132 57.6
vmacro02617 Vaccinium macrocarpon HOM05D007181 ORTHO05D008722 6.9e-24 114.8 99 52.5
PGR044G0699 Punica granatum HOM05D007181 ORTHO05D008722 9.0e-24 114.4 101 53.5
Solyc12g100320.2 Solanum lycopersicum HOM05D007181 ORTHO05D008722 9.0e-24 114.4 169 36.7
Os11g0616200 Oryza sativa ssp. japonica HOM05D007181 ORTHO05D008722 2.0e-23 113.2 140 55.7
Rhsim13G0029700 Rhododendron simsii HOM05D007181 ORTHO05D008722 2.0e-23 113.2 103 49.5
Hma1.2p1_1332F.1_g276040 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 2.6e-23 112.8 158 40.5
EL10Ac5g10486 Beta vulgaris HOM05D007181 ORTHO05D008722 4.4e-23 112.1 152 39.5
Peaxi162Scf00146g10111 Petunia axillaris HOM05D007181 ORTHO05D008722 4.4e-23 112.1 162 43.2
Sopen12g034950 Solanum pennellii HOM05D007181 ORTHO05D008722 4.4e-23 112.1 169 36.7
CAN.G575.12 Capsicum annuum HOM05D007181 ORTHO05D008722 9.9e-23 110.9 169 42.6
AUR62011964 Chenopodium quinoa HOM05D007181 ORTHO05D008722 2.2e-22 109.8 154 39.0
Ah.11g050140 Amaranthus hybridus HOM05D007181 ORTHO05D008722 6.4e-22 108.2 100 48.0
SEGI_03897 Sequoiadendron giganteum HOM05D007181 ORTHO05D008722 6.4e-22 108.2 139 49.6
Sc05g0001150 Simmondsia chinensis HOM05D007181 ORTHO05D008722 6.4e-22 108.2 129 57.4
PSO210G2677 Papaver somniferum HOM05D007181 ORTHO05D008722 1.4e-21 107.1 138 41.3
PSO210G2070 Papaver somniferum HOM05D007181 ORTHO05D008722 3.2e-21 105.9 135 47.4
FAN24G0107 Fragaria x ananassa HOM05D007181 ORTHO05D008722 4.2e-21 105.5 161 44.1
Ca_20981_v3 Cicer arietinum L. HOM05D007181 ORTHO05D008722 7.1e-21 104.8 100 47.0
HanXRQChr01g0005991 Helianthus annuus HOM05D007181 ORTHO05D008722 1.2e-20 104.0 133 49.6
Zm00001eb166760 Zea mays HOM05D007181 ORTHO05D008722 1.6e-20 103.6 136 53.7
Lj2P1163T10 Lonicera japonica HOM05D007181 ORTHO05D008722 2.7e-20 102.8 137 41.6
MD11G1277900 Malus domestica HOM05D007181 ORTHO05D008722 6.0e-20 101.7 147 47.6
SHI10021 Sapria himalayana HOM05D007181 ORTHO05D008722 7.8e-20 101.3 165 47.3
AagrBONN_evm.TU.Sc2ySwM_362.2054 Anthoceros agrestis HOM05D007181 ORTHO05D008722 1.0e-19 100.9 102 48.0
Pp3c24_16150 Physcomitrium patens HOM05D007181 ORTHO05D008722 1.8e-16 90.1 105 43.8
Pp3c8_19140 Physcomitrium patens HOM05D007181 ORTHO05D008722 9.0e-16 87.8 105 43.8
SMO143G0136 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 5.8e-15 85.1 132 35.6
Mapoly0126s0033 Marchantia polymorpha HOM05D007181 ORTHO05D008722 8.4e-14 81.3 101 44.6
TAR624G0264 Trochodendron aralioides HOM05D007181 ORTHO05D008722 2.1e-12 76.6 65 53.8
VMungo1215G0236 Vigna mungo HOM05D007181 ORTHO05D008722 2.3e-11 73.2 122 38.5
Psat3g061320 Pisum sativum HOM05D007181 ORTHO05D008722 8.7e-11 71.2 65 52.3
ATR0099G083 Amborella trichopoda HOM05D007181 ORTHO05D008722 8.1e-09 64.7 67 49.3
CBR_g39816 Chara braunii HOM05D007181 ORTHO05D008722 6.9e-08 61.6 81 38.3
SMO203G0031 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 9.9e-07 57.8 60 40.0
ATR0099G072 Amborella trichopoda HOM05D007181 ORTHO05D008722 6.4e-06 55.1 78 52.6


User provided reference genes

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