Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 7.5e-45 183.3 84 100.0
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 7.5e-45 183.3 84 100.0
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 2.2e-44 181.8 84 98.8
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 6.3e-44 180.3 84 98.8
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.1e-43 179.5 84 97.6
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-43 179.5 84 97.6
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-43 179.5 84 97.6
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 1.1e-43 179.5 84 97.6
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 1.1e-43 179.5 84 97.6
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 1.1e-43 179.5 84 97.6
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.1e-43 179.5 84 97.6
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.4e-43 179.1 84 97.6
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 3.1e-43 177.9 84 96.4
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 4.1e-43 177.6 84 96.4
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 4.1e-43 177.6 84 96.4
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 5.4e-43 177.2 84 97.6
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 9.2e-43 176.4 84 96.4
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 2.0e-42 175.3 84 95.2
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 2.0e-42 175.3 84 95.2
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 2.0e-42 175.3 84 95.2
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 3.5e-42 174.5 84 95.2
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 5.9e-42 173.7 84 95.2
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 5.9e-42 173.7 84 95.2
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 1.0e-41 172.9 84 94.0
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 1.7e-41 172.2 84 92.9
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 4.3e-40 167.5 84 91.7
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 1.2e-39 166.0 83 90.4
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 1.6e-39 165.6 83 90.4
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 2.1e-39 165.2 82 92.7
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 2.8e-39 164.9 84 91.7
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 3.6e-39 164.5 83 88.0
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.8e-38 162.2 84 88.1
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 2.3e-38 161.8 82 90.2
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 5.2e-38 160.6 83 90.4
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 1.5e-37 159.1 82 87.8
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 2.6e-37 158.3 83 88.0
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 3.4e-37 157.9 83 88.0
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 9.8e-37 156.4 84 84.5
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 1.3e-36 156.0 82 87.8
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 1.7e-36 155.6 82 85.4
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 2.9e-36 154.8 82 86.6
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.9e-36 154.8 82 84.1
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.9e-36 154.8 82 84.1
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 2.9e-36 154.8 82 84.1
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 2.9e-36 154.8 84 86.9
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 2.9e-36 154.8 82 86.6
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 3.7e-36 154.5 77 89.6
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 4.9e-36 154.1 83 85.5
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 4.9e-36 154.1 85 84.7
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 4.9e-36 154.1 84 85.7
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 4.9e-36 154.1 76 92.1
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 6.4e-36 153.7 83 86.7
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 8.3e-36 153.3 82 85.4
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 8.3e-36 153.3 82 85.4
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 8.3e-36 153.3 82 85.4
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 8.3e-36 153.3 82 85.4
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 1.1e-35 152.9 83 83.1
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 1.4e-35 152.5 82 85.4
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 1.8e-35 152.1 83 83.1
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 1.8e-35 152.1 83 86.7
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 2.4e-35 151.8 74 91.9
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 3.2e-35 151.4 85 82.4
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 3.2e-35 151.4 76 89.5
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 4.1e-35 151.0 83 81.9
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 5.4e-35 150.6 85 82.4
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.4e-35 150.6 84 83.3
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.4e-35 150.6 82 84.1
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 5.4e-35 150.6 82 84.1
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 7.0e-35 150.2 82 82.9
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 9.2e-35 149.8 84 82.1
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 9.2e-35 149.8 85 82.4
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 9.2e-35 149.8 85 82.4
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 1.2e-34 149.4 84 82.1
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.2e-34 149.4 85 82.4
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 1.6e-34 149.1 85 82.4
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 1.6e-34 149.1 74 90.5
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.6e-34 149.1 74 90.5
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.6e-34 149.1 82 81.7
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 1.6e-34 149.1 86 79.1
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 2.0e-34 148.7 84 79.8
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 2.7e-34 148.3 82 84.1
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.7e-34 148.3 84 82.1
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 2.7e-34 148.3 83 83.1
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 2.7e-34 148.3 83 83.1
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 2.7e-34 148.3 83 84.3
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 2.7e-34 148.3 82 80.5
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 2.7e-34 148.3 82 81.7
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 3.5e-34 147.9 82 80.5
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 4.6e-34 147.5 80 81.2
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 4.6e-34 147.5 83 83.1
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.6e-34 147.5 83 83.1
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.6e-34 147.5 83 83.1
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.6e-34 147.5 83 83.1
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 4.6e-34 147.5 76 84.2
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 5.9e-34 147.1 81 80.2
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 5.9e-34 147.1 74 89.2
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 5.9e-34 147.1 83 83.1
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 5.9e-34 147.1 84 81.0
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 5.9e-34 147.1 73 90.4
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 5.9e-34 147.1 83 81.9
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 7.8e-34 146.7 81 81.5
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 1.7e-33 145.6 84 81.0
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 1.7e-33 145.6 84 81.0
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 1.7e-33 145.6 84 81.0
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 1.7e-33 145.6 85 78.8
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 2.3e-33 145.2 84 79.8
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 2.3e-33 145.2 82 79.3
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 3.0e-33 144.8 74 86.5
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 3.9e-33 144.4 84 79.8
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 5.0e-33 144.1 83 78.3
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 5.0e-33 144.1 71 90.1
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 5.0e-33 144.1 85 77.6
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 6.6e-33 143.7 102 67.6
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 8.6e-33 143.3 87 75.9
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 1.1e-32 142.9 74 87.8
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.5e-32 142.5 84 78.6
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 79.5
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 7.3e-32 140.2 103 68.0
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 4.7e-31 137.5 65 92.3
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 5.2e-30 134.0 63 93.7
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 6.8e-30 133.7 62 93.5
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 6.8e-30 133.7 62 93.5
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.0e-29 132.1 61 93.4
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 2.6e-29 131.7 61 93.4
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 7.5e-29 130.2 60 93.3
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 7.5e-29 130.2 77 79.2
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 1.7e-28 129.0 57 96.5
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 2.2e-28 128.6 74 75.7
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 4.9e-28 127.5 96 65.6
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 5.0e-25 117.5 50 98.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 7.3e-24 113.6 50 96.0
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 9.5e-24 113.2 63 81.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 1.6e-23 112.5 50 94.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 1.1e-22 109.8 50 92.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 4.4e-21 104.4 49 87.8
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 9.9e-21 103.2 77 62.3
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 6.4e-20 100.5 59 83.1
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 1.4e-19 99.4 84 57.1
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 1.4e-19 99.4 80 55.0
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 2.4e-19 98.6 80 57.5
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 5.4e-19 97.4 84 56.0
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 7.6e-13 77.0 63 52.4
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 2.8e-07 58.5 29 86.2
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 3.1e-06 55.1 23 91.3


User provided reference genes

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