Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 1.1e-85 320.5 244 100.0
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 7.4e-61 238.0 246 60.2
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 8.0e-55 218.0 146 76.7
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 1.4e-54 217.2 148 77.0
Thhalv10006051m.g Eutrema salsugineum HOM05D012658 ORTHO05D010583 1.2e-45 187.6 145 66.2
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 9.8e-45 184.5 244 55.3
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 3.7e-44 182.6 244 55.3
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 4.1e-43 179.1 246 54.5
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 3.5e-42 176.0 145 65.5
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 5.9e-42 175.3 251 53.0
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 2.9e-41 172.9 251 52.6
A05p34600 Brassica napus HOM05D012658 ORTHO05D010583 8.0e-39 164.9 131 66.4
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 2.1e-31 140.2 134 50.7
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 8.0e-23 111.7 139 41.7
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 2.9e-20 103.2 129 41.1
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 2.9e-20 103.2 125 44.0
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 1.1e-19 101.3 131 39.7
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 1.4e-19 100.9 128 41.4
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.4e-19 100.9 128 41.4
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 3.2e-19 99.8 130 40.8
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 3.2e-19 99.8 128 40.6
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 4.1e-19 99.4 128 41.4
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 9.2e-19 98.2 131 39.7
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 1.6e-18 97.4 131 38.2
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 4.6e-18 95.9 130 37.7
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 4.6e-18 95.9 128 39.8
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 7.8e-18 95.1 129 38.8
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 1.7e-17 94.0 130 39.2
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 2.3e-17 93.6 130 39.2
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 2.3e-17 93.6 128 39.1
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 3.0e-17 93.2 139 37.4
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 8.6e-17 91.7 125 37.6
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 1.5e-16 90.9 124 39.5
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 9.5e-16 88.2 149 36.2
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 1.2e-15 87.8 131 32.8
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 1.2e-15 87.8 134 38.8
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 1.6e-15 87.4 132 37.1
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 1.6e-15 87.4 131 34.4
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 2.1e-15 87.0 130 36.9
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 2.8e-15 86.7 141 39.0
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 6.2e-15 85.5 130 34.6
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 2.3e-14 83.6 129 35.7
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 2.3e-14 83.6 133 33.8
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 4.4e-13 79.3 132 34.8
Aqoxy3G01114 Aquilegia oxysepala HOM05D008757 ORTHO05D010583 9.9e-13 78.2 133 35.3
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 2.2e-12 77.0 135 32.6
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 2.1e-10 70.5 133 34.6
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 4.6e-10 69.3 71 46.5
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 3.9e-09 66.2 71 45.1
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 6.6e-09 65.5 133 32.3
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 3.3e-08 63.2 127 28.3
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 1.2e-07 61.2 143 30.1
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 1.2e-07 61.2 143 30.1
Peaxi162Scf00001g00251 Petunia axillaris HOM05D008757 ORTHO05D010583 1.6e-07 60.8 156 28.2


User provided reference genes

Program Settings