Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 2.1e-115 419.1 222 100.0
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.6e-33 147.1 206 42.7
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 6.0e-33 145.2 204 42.2
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 7.8e-33 144.8 204 45.1
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 7.8e-33 144.8 204 46.1
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 1.0e-32 144.4 205 42.9
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.3e-32 143.3 205 42.4
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.3e-32 143.3 205 42.4
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 3.0e-32 142.9 207 43.0
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 6.6e-32 141.7 216 40.3
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 8.6e-32 141.4 204 43.1
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.1e-31 141.0 209 45.0
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.5e-31 140.6 204 41.2
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.5e-31 140.6 200 43.5
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.5e-31 140.6 207 44.0
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.5e-31 139.8 204 40.7
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 2.5e-31 139.8 200 43.5
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 2.5e-31 139.8 207 43.0
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.5e-31 139.8 203 41.9
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 2.5e-31 139.8 204 41.7
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 3.3e-31 139.4 204 40.7
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 4.3e-31 139.0 204 42.2
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 4.3e-31 139.0 204 42.2
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 9.5e-31 137.9 205 43.4
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 9.5e-31 137.9 208 41.3
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 9.5e-31 137.9 204 42.6
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.2e-30 137.5 205 41.0
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.2e-30 137.5 204 41.7
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.2e-30 137.5 207 42.0
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 1.6e-30 137.1 205 41.0
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 1.6e-30 137.1 205 41.0
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 2.8e-30 136.3 204 41.2
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 3.6e-30 136.0 204 41.7
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 4.7e-30 135.6 198 41.9
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 6.2e-30 135.2 204 41.7
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 6.2e-30 135.2 153 48.4
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 6.2e-30 135.2 205 42.9
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 6.2e-30 135.2 204 42.2
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 8.1e-30 134.8 205 42.0
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 8.1e-30 134.8 205 42.9
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 8.1e-30 134.8 205 42.4
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 1.4e-29 134.0 204 42.2
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.4e-29 134.0 204 41.7
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 2.3e-29 133.3 163 44.8
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 2.3e-29 133.3 175 41.7
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 3.1e-29 132.9 205 41.0
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 3.1e-29 132.9 204 41.2
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 4.0e-29 132.5 216 38.4
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 4.0e-29 132.5 204 39.7
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 4.0e-29 132.5 151 47.0
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 6.8e-29 131.7 204 41.2
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.2e-28 131.0 207 39.1
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.5e-28 130.6 174 42.0
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 2.0e-28 130.2 204 41.2
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 2.6e-28 129.8 216 39.4
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.4e-28 129.4 203 42.9
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.4e-28 129.4 131 51.1
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 4.4e-28 129.0 204 40.7
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 5.8e-28 128.6 216 37.5
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 5.8e-28 128.6 204 41.7
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 5.8e-28 128.6 147 47.6
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.3e-27 127.5 206 40.3
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 1.3e-27 127.5 131 49.6
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.7e-27 127.1 203 38.9
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 2.2e-27 126.7 151 44.4
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 2.9e-27 126.3 163 43.6
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 2.9e-27 126.3 163 43.6
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.9e-27 126.3 131 48.1
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 3.8e-27 125.9 180 40.6
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 8.4e-27 124.8 168 41.7
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 8.4e-27 124.8 168 41.7
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.1e-26 124.4 216 38.4
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.4e-26 124.0 163 42.3
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 1.4e-26 124.0 192 38.0
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.9e-26 123.6 204 38.2
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 2.4e-26 123.2 151 43.0
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 3.2e-26 122.9 201 37.8
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 3.2e-26 122.9 207 38.2
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 4.1e-26 122.5 163 42.3
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 5.4e-26 122.1 204 38.2
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 7.1e-26 121.7 217 36.9
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 7.1e-26 121.7 151 43.7
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 2.1e-25 120.2 164 42.7
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 2.1e-25 120.2 164 42.7
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 6.0e-25 118.6 163 42.3
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 7.8e-25 118.2 204 37.7
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.0e-24 117.9 205 37.1
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.3e-24 117.5 201 36.3
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.3e-24 117.5 205 38.0
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.3e-24 117.5 205 37.6
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 1.7e-24 117.1 205 36.6
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.7e-24 117.1 115 53.0
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 2.3e-24 116.7 203 35.5
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.9e-24 115.9 115 52.2
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 5.1e-24 115.5 204 35.8
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 6.6e-24 115.2 201 35.8
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.1e-23 114.4 201 36.3
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.1e-23 114.4 208 37.5
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.1e-23 114.4 204 36.3
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.1e-23 114.4 204 36.3
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 1.5e-23 114.0 168 39.9
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.5e-23 114.0 204 36.3
AT3G43260 Arabidopsis thaliana HOM05D046300 ORTHO05D038666 1.9e-23 113.6 136 55.9
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 1.9e-23 113.6 163 41.1
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 4.3e-23 112.5 151 41.7
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 7.3e-23 111.7 204 37.7
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 9.6e-23 111.3 205 36.6
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.2e-22 110.9 204 35.8
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.2e-22 110.9 204 35.8
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 2.1e-22 110.2 203 36.0
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 3.6e-22 109.4 204 33.8
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 3.6e-22 109.4 204 35.8
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.7e-22 109.0 204 35.3
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 4.7e-22 109.0 207 36.7
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.4e-21 107.5 204 38.2
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 3.1e-21 106.3 201 34.3
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 8.9e-21 104.8 151 39.1
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.0e-20 103.6 203 35.0
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 4.4e-20 102.4 204 35.3
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 4.4e-20 102.4 92 58.7
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 2.9e-19 99.8 124 42.7
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 3.8e-19 99.4 151 40.4
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 7.8e-17 91.7 157 34.4
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 7.8e-17 91.7 202 31.7
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 2.3e-16 90.1 162 38.3
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 5.1e-16 89.0 136 35.3
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.1e-15 87.8 132 36.4
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.6e-14 84.0 147 32.0
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.8e-14 83.2 147 32.7
AT3G62460 Arabidopsis thaliana HOM05D031957 ORTHO05D021385 4.8e-14 82.4 44 95.5
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.2e-12 77.8 140 32.1
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 9.9e-12 74.7 82 47.6
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.9e-11 73.2 203 30.0
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 3.2e-10 69.7 120 36.7
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 7.9e-09 65.1 134 29.1
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 1.3e-08 64.3 125 32.8
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 6.7e-08 62.0 133 33.8
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 1.5e-07 60.8 138 27.5
AL1G50550 Arabidopsis lyrata HOM05D046300 ORTHO05D038666 2.1e-06 57.0 55 63.6


User provided reference genes

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