Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.2e-219 766.1 362 100.0
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 7.3e-214 746.9 362 96.7
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 3.6e-205 718.0 362 92.0
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 4.0e-204 714.5 362 91.4
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 9.0e-204 713.4 363 92.8
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 2.6e-203 711.8 362 91.7
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.7e-202 709.1 362 90.9
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.4e-201 706.1 362 90.3
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 3.2e-201 704.9 362 90.3
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 3.2e-201 704.9 362 90.3
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 9.3e-201 703.4 362 90.1
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 2.3e-199 698.7 362 89.2
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 4.0e-188 661.4 359 83.3
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 2.3e-159 565.8 339 74.6
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 5.2e-159 564.7 361 70.4
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.5e-158 563.1 342 73.7
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.7e-157 558.5 362 70.4
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 3.7e-157 558.5 363 71.3
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 5.3e-156 554.7 360 70.0
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 5.3e-156 554.7 361 71.2
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 7.0e-156 554.3 366 69.9
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 9.1e-156 553.9 338 72.8
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.2e-155 553.5 362 69.6
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.2e-155 553.5 359 71.0
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.0e-155 552.7 359 69.9
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 2.0e-155 552.7 353 70.5
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 2.6e-155 552.4 342 71.6
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.0e-154 550.4 359 71.6
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.0e-154 550.4 339 73.2
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 1.3e-154 550.1 361 70.6
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.0e-154 548.1 356 70.2
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.5e-154 547.7 356 70.2
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 8.5e-154 547.4 361 70.9
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.9e-153 546.2 364 69.0
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 2.5e-153 545.8 350 71.4
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 9.4e-153 543.9 337 72.7
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.6e-152 543.1 342 68.7
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 2.1e-152 542.7 340 72.4
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 2.1e-152 542.7 356 69.7
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 6.1e-152 541.2 359 70.2
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.0e-151 540.4 368 67.4
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 1.4e-151 540.0 354 68.9
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 1.4e-151 540.0 355 69.6
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.8e-151 539.7 343 70.8
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.8e-151 539.7 359 68.5
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.0e-151 538.9 356 69.9
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 4.0e-151 538.5 364 67.9
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 6.7e-151 537.7 364 67.6
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.5e-150 536.6 359 68.0
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 2.0e-150 536.2 357 68.3
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 2.6e-150 535.8 335 72.5
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 4.4e-150 535.0 343 70.3
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 5.7e-150 534.6 360 67.8
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.8e-148 529.6 363 65.6
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.8e-148 529.6 340 69.1
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 7.0e-148 527.7 361 66.2
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 9.1e-148 527.3 350 69.1
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 7.7e-147 524.2 339 67.6
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.5e-145 520.0 358 64.0
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 1.9e-145 519.6 366 67.5
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 1.9e-145 519.6 353 68.6
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 3.2e-145 518.8 352 66.8
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 4.2e-145 518.5 362 65.5
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 9.4e-145 517.3 361 63.7
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 3.6e-144 515.4 319 72.7
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 3.6e-144 515.4 320 72.5
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 6.1e-144 514.6 307 74.6
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 6.1e-144 514.6 319 72.7
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 8.0e-144 514.2 319 72.7
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 4.0e-143 511.9 360 64.7
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 4.4e-142 508.4 361 63.4
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 4.4e-142 508.4 363 64.7
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 5.7e-142 508.1 355 63.7
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 7.5e-142 507.7 360 63.6
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 9.8e-142 507.3 312 69.9
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.8e-141 505.8 360 63.6
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 2.8e-141 505.8 360 63.6
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 3.7e-141 505.4 360 63.3
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 6.3e-141 504.6 358 63.7
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.1e-140 502.3 356 65.4
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 9.1e-140 500.7 359 64.3
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.0e-139 499.6 267 83.5
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 1.3e-138 496.9 354 64.7
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 2.2e-138 496.1 356 65.4
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.5e-137 492.7 339 65.2
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.2e-137 491.9 344 64.5
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 2.8e-136 489.2 356 64.0
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 6.1e-136 488.0 452 52.7
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 1.5e-134 483.4 344 63.4
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.5e-134 483.4 436 53.2
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 4.4e-134 481.9 357 60.8
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 3.7e-133 478.8 348 64.9
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 6.3e-133 478.0 354 65.0
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.1e-132 477.2 351 61.3
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.4e-132 476.9 406 57.4
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.4e-132 476.9 351 61.3
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.4e-132 474.9 340 65.9
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 5.4e-132 474.9 340 65.9
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 7.0e-132 474.6 351 60.7
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 2.7e-131 472.6 361 59.0
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 4.5e-131 471.9 357 60.5
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.7e-130 469.9 354 59.9
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.7e-130 469.9 359 63.5
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.9e-129 466.5 362 59.7
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.2e-128 463.8 340 60.9
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 4.4e-126 455.3 332 62.7
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 7.5e-126 454.5 360 58.9
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 5.4e-124 448.4 358 57.3
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 2.7e-123 446.0 276 72.5
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 5.9e-123 444.9 276 72.1
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 5.0e-122 441.8 276 71.7
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 4.0e-119 432.2 313 62.9
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.3e-117 427.2 359 57.1
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 3.2e-116 422.5 259 73.7
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 9.2e-108 394.4 282 63.1
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.3e-106 389.8 357 52.1
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 3.1e-103 379.4 289 58.5
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 5.8e-102 375.2 320 57.2
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.9e-101 372.9 225 72.4
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.3e-98 363.2 255 65.1
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 8.1e-96 354.8 338 50.9
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.3e-93 347.4 202 75.2
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.8e-88 328.9 229 62.9
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.8e-87 327.0 233 63.1
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 4.0e-87 325.9 281 54.8
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.5e-86 323.9 216 64.4
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 5.4e-84 315.5 355 45.4
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 5.1e-82 308.9 363 43.8
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.3e-81 306.2 300 50.7
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 6.9e-79 298.5 184 75.0
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.6e-78 296.6 172 74.4
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 2.6e-78 296.6 333 44.7
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.7e-75 286.6 187 70.1
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 4.6e-75 285.8 316 45.6
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 1.0e-74 284.6 192 68.8
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.9e-58 229.6 155 70.3
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 6.7e-58 228.8 240 47.1
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 7.7e-54 215.3 158 62.7
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 4.5e-38 162.9 143 53.8
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 9.4e-36 155.2 214 37.9
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 3.1e-31 140.2 108 59.3
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.3e-29 134.8 104 61.5
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.7e-24 117.9 98 58.2
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.2e-22 111.7 102 49.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 8.0e-19 99.0 99 48.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.7e-13 81.3 137 30.7
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 4.9e-08 63.2 114 33.3


User provided reference genes

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