Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G62350 Arabidopsis thaliana HOM05D010079 ORTHO05D011550 2.2e-139 498.8 229 100.0
Carub.0005s2907 Capsella rubella HOM05D010079 ORTHO05D011550 2.0e-71 273.1 223 59.6
AL2G29740 Arabidopsis lyrata HOM05D010079 ORTHO05D011550 1.0e-56 224.2 221 51.6
Sp7g12250 Schrenkiella parvula HOM05D010079 ORTHO05D011550 7.5e-55 218.0 215 50.2
Carub.0002s1777 Capsella rubella HOM05D010079 ORTHO05D011550 5.4e-53 211.8 227 49.8
AT1G71320 Arabidopsis thaliana HOM05D010079 ORTHO05D011550 1.6e-52 210.3 220 50.9
AL2G30500 Arabidopsis lyrata HOM05D010079 ORTHO05D011550 1.3e-51 207.2 218 50.0
Thhalv10009972m.g Eutrema salsugineum HOM05D010079 ORTHO05D011550 1.3e-51 207.2 215 51.2
Carub.0002s1775 Capsella rubella HOM05D010079 ORTHO05D011550 1.1e-50 204.1 228 46.9
Sp1g33930 Schrenkiella parvula HOM05D010079 ORTHO05D011550 7.3e-42 174.9 200 46.5
SpUn0058_0010 Schrenkiella parvula HOM05D010079 ORTHO05D011550 7.3e-42 174.9 200 46.5
AL2G23450 Arabidopsis lyrata HOM05D026666 ORTHO05D026802 4.0e-40 169.1 221 43.0
AT3G62380 Arabidopsis thaliana HOM05D010079 ORTHO05D011550 5.2e-32 142.1 200 39.0
BcaNung03153 Brassica carinata HOM05D010079 ORTHO05D011550 1.3e-30 137.5 208 38.9
C04p30670 Brassica napus HOM05D010079 ORTHO05D011550 1.7e-27 127.1 208 38.9
Carub.0005s2910 Capsella rubella HOM05D010079 ORTHO05D011550 4.7e-25 119.0 211 35.1
AL5G45090 Arabidopsis lyrata HOM05D001738 ORTHO05D011550 1.4e-24 117.5 165 41.2
AL5G45170 Arabidopsis lyrata HOM05D010079 ORTHO05D011550 2.3e-24 116.7 153 41.2
CARHR172670 Cardamine hirsuta HOM05D001738 ORTHO05D011550 3.1e-24 116.3 184 36.4
BraA09t40629Z Brassica rapa HOM05D010079 ORTHO05D011550 1.2e-20 104.4 184 34.2
AL5G45150 Arabidopsis lyrata HOM05D010079 ORTHO05D011550 7.8e-20 101.7 110 43.6
Thhalv10009802m.g Eutrema salsugineum HOM05D010079 ORTHO05D011550 5.6e-18 95.5 145 37.9
Sp1g28940 Schrenkiella parvula HOM05D001738 ORTHO05D011550 6.2e-17 92.0 161 35.4
AL5G11230 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 4.0e-16 89.4 177 30.5
Thhalv10017914m.g Eutrema salsugineum HOM05D010079 ORTHO05D011550 2.2e-14 83.6 213 29.6
CARHR032950 Cardamine hirsuta HOM05D001738 ORTHO05D011550 2.9e-14 83.2 170 32.4
C05p47410 Brassica napus HOM05D001738 ORTHO05D001644 4.9e-14 82.4 191 28.3
CARHR172720 Cardamine hirsuta HOM05D010079 ORTHO05D011550 4.9e-14 82.4 147 36.7
BraA05t21312Z Brassica rapa HOM05D001738 ORTHO05D001644 8.4e-14 81.6 157 35.0
A05p31290 Brassica napus HOM05D001738 ORTHO05D001644 1.1e-13 81.3 191 26.7
A08p05820 Brassica napus HOM05D001738 ORTHO05D001644 1.1e-13 81.3 191 27.2
C05p47360 Brassica napus HOM05D001738 ORTHO05D001644 1.1e-13 81.3 191 26.7
BolC5t33463H Brassica oleracea HOM05D001738 ORTHO05D001644 1.1e-13 81.3 191 26.7
BolC5t33470H Brassica oleracea HOM05D001738 ORTHO05D001644 1.1e-13 81.3 191 27.2
Thecc.05G284500 Theobroma cacao HOM05D000007 ORTHO05D001644 1.4e-13 80.9 185 34.1
BcaC05g28637 Brassica carinata HOM05D001738 ORTHO05D001644 1.9e-13 80.5 191 28.3
BraA05t21965Z Brassica rapa HOM05D001738 ORTHO05D001644 1.9e-13 80.5 191 26.7
AT1G33530 Arabidopsis thaliana HOM05D001738 ORTHO05D011550 2.1e-12 77.0 167 34.1
Sp1g29020 Schrenkiella parvula HOM05D001738 ORTHO05D011550 2.1e-12 77.0 164 30.5
AT2G02030 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 7.8e-12 75.1 141 31.9
Carub.0006s0880 Capsella rubella HOM05D001738 ORTHO05D001644 2.3e-11 73.6 162 32.7
Sp1g27610 Schrenkiella parvula HOM05D001738 ORTHO05D001644 2.3e-11 73.6 169 26.0
BcaB07g30712 Brassica carinata HOM05D001738 ORTHO05D001644 3.0e-11 73.2 165 26.1
BcaC04g21963 Brassica carinata HOM05D001738 ORTHO05D001644 3.9e-11 72.8 167 31.1
C05p07170 Brassica napus HOM05D005941 ORTHO05D007879 5.1e-11 72.4 174 29.9
Thecc.05G284600 Theobroma cacao HOM05D000007 ORTHO05D001644 5.1e-11 72.4 171 31.0
CARHR144650 Cardamine hirsuta HOM05D001738 ORTHO05D001644 1.9e-10 70.5 166 28.3
Thhalv10006469m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 5.6e-10 68.9 164 30.5
BcaC04g21532 Brassica carinata HOM05D001738 ORTHO05D001644 9.6e-10 68.2 162 27.2
BraA08t32583Z Brassica rapa HOM05D001738 ORTHO05D001644 1.3e-09 67.8 142 29.6
C02p03830 Brassica napus HOM05D001738 ORTHO05D001644 2.1e-09 67.0 169 30.2
Carub.0001s3170 Capsella rubella HOM05D001738 ORTHO05D001644 2.8e-09 66.6 171 31.6
Carub.0006s1692 Capsella rubella HOM05D001738 ORTHO05D001644 2.8e-09 66.6 171 25.7
Duzib128G1891 Durio zibethinus HOM05D000007 ORTHO05D001644 4.8e-09 65.9 165 30.3
Duzib128G1098 Durio zibethinus HOM05D022682 ORTHO05D001644 6.2e-09 65.5 187 25.1
Thhalv10006448m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 6.2e-09 65.5 162 30.2
BolC4t28542H Brassica oleracea HOM05D005941 ORTHO05D007879 1.1e-08 64.7 160 29.4
Thhalv10027244m.g Eutrema salsugineum HOM05D005941 ORTHO05D007879 1.1e-08 64.7 209 23.4
Aa31LG8G6370 Aethionema arabicum HOM05D001738 ORTHO05D001644 1.8e-08 63.9 171 27.5
Thhalv10016716m.g Eutrema salsugineum HOM05D005941 ORTHO05D007879 1.8e-08 63.9 162 28.4
Thhalv10009680m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 2.4e-08 63.5 165 27.3
Thhalv10017844m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 4.0e-08 62.8 158 25.9
AL4G41950 Arabidopsis lyrata HOM05D005941 ORTHO05D007879 1.2e-07 61.2 165 27.9
BcaNung06467 Brassica carinata HOM05D005941 ORTHO05D007879 1.2e-07 61.2 205 23.9
CARHR045390 Cardamine hirsuta HOM05D010079 ORTHO05D011550 1.5e-07 60.8 67 49.3
CARHR124000 Cardamine hirsuta HOM05D001738 ORTHO05D001644 1.5e-07 60.8 174 27.0
Carub.0005s2945 Capsella rubella HOM05D005941 ORTHO05D007879 2.0e-07 60.5 153 26.8
BraA07t29061Z Brassica rapa HOM05D005941 ORTHO05D007879 2.6e-07 60.1 160 25.0
CARHR134100 Cardamine hirsuta HOM05D005941 ORTHO05D007879 2.6e-07 60.1 170 28.2
C03p26940 Brassica napus HOM05D005941 ORTHO05D007879 3.4e-07 59.7 165 26.7
A04p27510 Brassica napus HOM05D001738 ORTHO05D001644 4.4e-07 59.3 155 28.4
BraA04t18245Z Brassica rapa HOM05D001738 ORTHO05D001644 4.4e-07 59.3 155 28.4
AT4G17780 Arabidopsis thaliana HOM05D005941 ORTHO05D007879 5.8e-07 58.9 179 25.7
BcaC06g33593 Brassica carinata HOM05D005941 ORTHO05D007879 5.8e-07 58.9 170 27.1
C03p26950 Brassica napus HOM05D005941 ORTHO05D007879 5.8e-07 58.9 158 27.2
BolC7t45422H Brassica oleracea HOM05D005941 ORTHO05D007879 5.8e-07 58.9 170 27.1
BcaC01g05402 Brassica carinata HOM05D005941 ORTHO05D007879 7.6e-07 58.5 158 27.2
BcaC06g35173 Brassica carinata HOM05D005941 ORTHO05D007879 7.6e-07 58.5 161 25.5
CARHR125670 Cardamine hirsuta HOM05D001738 ORTHO05D001644 7.6e-07 58.5 170 27.6
A07p12860 Brassica napus HOM05D005941 ORTHO05D007879 9.9e-07 58.2 160 25.0
BcaC06g35147 Brassica carinata HOM05D005941 ORTHO05D007879 1.3e-06 57.8 161 25.5
BolC7t42451H Brassica oleracea HOM05D005941 ORTHO05D007879 1.3e-06 57.8 161 25.5
BolC7t42414H Brassica oleracea HOM05D005941 ORTHO05D007879 1.7e-06 57.4 161 24.8
BcaC06g35151 Brassica carinata HOM05D005941 ORTHO05D007879 2.2e-06 57.0 161 25.5
BolC7t42445H Brassica oleracea HOM05D005941 ORTHO05D007879 2.2e-06 57.0 161 25.5
CARHR130490 Cardamine hirsuta HOM05D005941 ORTHO05D007879 2.9e-06 56.6 162 27.2
C07p59910 Brassica napus HOM05D001738 ORTHO05D001644 6.4e-06 55.5 179 26.3


User provided reference genes

Program Settings