Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 7.3e-270 933.3 480 100.0
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.7e-255 885.6 480 95.0
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 7.3e-254 880.2 480 94.6
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 2.1e-237 825.5 481 90.9
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 1.8e-228 795.8 481 87.3
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 7.7e-227 790.4 484 87.2
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 4.1e-220 768.1 491 85.1
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 1.6e-203 713.0 498 79.7
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 3.6e-200 701.8 500 79.4
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 1.4e-199 699.9 498 78.5
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 8.8e-199 697.2 521 77.2
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 5.2e-175 618.2 565 65.3
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 7.8e-171 604.4 480 71.0
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.7e-165 585.5 481 68.8
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 2.0e-150 536.6 479 65.3
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 3.5e-147 525.8 477 63.5
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 3.9e-146 522.3 478 64.0
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 3.1e-143 512.7 481 63.4
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 4.0e-143 512.3 479 63.5
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 6.9e-143 511.5 481 62.4
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 2.6e-142 509.6 481 63.4
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 2.9e-141 506.1 478 61.9
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.2e-139 500.7 476 62.2
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 6.0e-139 498.4 483 62.7
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.0e-138 497.7 478 61.5
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 3.0e-138 496.1 485 60.2
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 6.6e-138 495.0 478 61.3
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.5e-137 493.8 478 61.3
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 4.8e-136 488.8 442 63.1
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 1.4e-135 487.3 479 60.5
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 2.4e-135 486.5 478 58.4
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 9.0e-135 484.6 479 59.7
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 2.0e-134 483.4 480 60.2
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.8e-134 481.9 479 59.5
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.2e-133 479.9 479 59.5
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.8e-133 479.2 479 59.3
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 4.9e-133 478.8 477 61.2
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.9e-133 478.8 479 59.1
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 8.4e-133 478.0 480 59.2
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 3.2e-132 476.1 479 59.3
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.4e-132 475.3 479 58.9
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 3.5e-131 472.6 481 58.2
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 6.0e-131 471.9 476 58.6
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 7.9e-131 471.5 481 60.1
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 1.3e-130 470.7 481 59.5
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 1.3e-130 470.7 483 57.8
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.1e-129 467.6 481 58.6
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 1.5e-129 467.2 480 57.3
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 3.3e-129 466.1 477 57.0
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 4.3e-129 465.7 484 58.9
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 1.3e-128 464.2 506 55.5
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.3e-128 464.2 482 60.4
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 3.7e-128 462.6 479 58.0
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 3.7e-128 462.6 480 56.9
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 6.2e-128 461.8 498 57.0
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.1e-127 461.1 475 57.9
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 1.8e-127 460.3 479 57.2
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 3.1e-127 459.5 482 56.8
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 2.0e-126 456.8 486 57.0
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 1.7e-125 453.8 482 56.4
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 2.2e-125 453.4 483 56.7
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 1.4e-124 450.7 498 56.2
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.2e-123 447.6 493 57.4
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 4.6e-123 445.7 505 54.3
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 5.1e-122 442.2 479 56.8
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.5e-121 440.7 529 52.0
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 8.2e-120 434.9 447 59.3
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 9.0e-119 431.4 491 53.2
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 2.2e-117 426.8 542 52.0
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 2.9e-117 426.4 513 52.2
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 3.8e-117 426.0 483 53.8
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 6.5e-117 425.2 479 55.1
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 1.9e-116 423.7 521 51.2
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 2.7e-115 419.9 480 54.0
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 6.1e-115 418.7 511 52.4
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.3e-114 417.5 520 52.1
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 1.8e-114 417.2 490 53.5
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 1.8e-114 417.2 504 51.8
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 2.3e-114 416.8 501 53.1
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 7.4e-113 411.8 481 53.0
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 7.4e-113 411.8 493 53.5
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 6.9e-111 405.2 492 52.8
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 9.0e-111 404.8 526 51.3
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 1.2e-110 404.4 483 51.8
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 3.8e-109 399.4 376 62.5
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.9e-108 397.1 505 51.3
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 1.9e-108 397.1 486 51.9
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 4.2e-108 396.0 479 52.4
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 1.6e-107 394.0 552 47.8
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.1e-105 387.9 552 47.5
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.1e-105 387.9 450 53.3
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 3.7e-104 382.9 489 50.3
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 8.2e-104 381.7 484 51.4
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 1.4e-103 380.9 492 49.8
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 1.9e-100 370.5 357 59.9
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 5.5e-100 369.0 488 48.6
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 9.4e-100 368.2 564 47.0
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 3.6e-99 366.3 357 60.2
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 3.3e-97 359.8 543 46.2
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 9.1e-95 351.7 496 50.2
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 9.1e-95 351.7 426 53.1
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.0e-90 336.7 529 44.6
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 1.5e-89 334.3 233 79.8
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.0e-89 334.0 525 45.1
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 2.0e-89 334.0 438 49.3
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 2.2e-88 330.5 233 79.0
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 6.5e-85 318.9 330 57.0
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 6.1e-83 312.4 225 77.3
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 4.0e-82 309.7 329 59.3
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 4.7e-75 286.2 264 63.3
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 3.3e-60 236.9 259 55.6
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 7.3e-60 235.7 265 52.5
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.9e-56 223.8 177 63.8
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 3.9e-53 213.4 366 40.4
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 5.6e-52 209.5 220 57.3
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 5.2e-50 203.0 501 33.3
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 4.6e-46 189.9 128 79.7
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.3e-45 187.6 433 36.5
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 3.9e-45 186.8 446 35.7
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 8.9e-42 175.6 505 32.3
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 9.9e-33 145.6 495 30.5
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 2.9e-32 144.1 433 31.9
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.9e-31 141.4 373 35.1
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.1e-28 132.1 439 30.8
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 5.6e-28 129.8 473 29.4
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.2e-25 122.1 460 28.9
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 3.8e-24 117.1 160 48.8
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 1.1e-23 115.5 186 43.5
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 9.3e-23 112.5 139 50.4
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.3e-21 107.8 86 72.1
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 4.3e-20 103.6 119 52.1
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 2.2e-16 91.3 66 71.2
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 3.8e-16 90.5 66 71.2
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 6.2e-11 73.2 41 80.5
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 2.7e-06 57.8 89 44.9
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 6.0e-06 56.6 153 30.7
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 6.0e-06 56.6 187 29.4


User provided reference genes

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