Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 7.3e-77 290.4 140 100.0
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 2.3e-62 242.3 141 86.5
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 2.4e-56 222.2 130 83.1
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 8.9e-51 203.8 144 72.2
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 2.6e-50 202.2 144 72.2
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 9.9e-50 200.3 126 78.6
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 1.3e-49 199.9 133 75.9
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 2.3e-46 189.1 137 69.3
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 2.3e-46 189.1 137 69.3
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 1.2e-44 183.3 142 67.6
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 8.2e-12 74.3 88 43.2
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 8.2e-12 74.3 88 43.2
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 1.4e-11 73.6 105 41.9
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 6.9e-11 71.2 110 40.0
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.5e-10 70.1 108 39.8
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 2.0e-10 69.7 92 43.5
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 7.6e-10 67.8 48 62.5
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.0e-09 67.4 36 75.0
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.7e-09 66.6 109 36.7
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.7e-09 66.6 109 36.7
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 1.7e-09 66.6 57 56.1
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 1.7e-09 66.6 108 36.1
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 2.2e-09 66.2 54 61.1
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 2.2e-09 66.2 54 61.1
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.9e-09 65.9 109 35.8
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 5.0e-09 65.1 102 37.3
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 8.5e-09 64.3 36 69.4
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 1.1e-08 63.9 34 73.5
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.1e-08 63.9 115 36.5
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.4e-08 63.5 44 56.8
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.9e-08 63.2 35 71.4
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 1.9e-08 63.2 130 33.8
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 2.5e-08 62.8 102 37.3
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 2.5e-08 62.8 36 66.7
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.5e-08 62.8 36 66.7
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.5e-08 62.8 36 66.7
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 3.2e-08 62.4 120 36.7
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 3.2e-08 62.4 93 38.7
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 4.2e-08 62.0 135 35.6
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 5.5e-08 61.6 58 50.0
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 7.2e-08 61.2 34 70.6
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 7.2e-08 61.2 44 54.5
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 7.2e-08 61.2 37 67.6
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 9.3e-08 60.8 37 64.9
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 9.3e-08 60.8 36 69.4
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 9.3e-08 60.8 105 35.2
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 1.2e-07 60.5 53 56.6
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.2e-07 60.5 132 33.3
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.6e-07 60.1 36 63.9
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.6e-07 60.1 36 63.9
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 1.6e-07 60.1 72 41.7
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 1.6e-07 60.1 64 40.6
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.6e-07 60.1 34 67.6
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.6e-07 60.1 34 67.6
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.6e-07 60.1 34 67.6
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 2.1e-07 59.7 36 66.7
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 2.1e-07 59.7 36 66.7
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 2.1e-07 59.7 31 71.0
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 2.7e-07 59.3 41 58.5
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 2.7e-07 59.3 54 51.9
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 2.7e-07 59.3 53 49.1
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 3.6e-07 58.9 118 33.9
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 3.6e-07 58.9 42 59.5
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 3.6e-07 58.9 66 50.0
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 3.6e-07 58.9 47 57.4
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 4.6e-07 58.5 59 42.4
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 4.6e-07 58.5 47 57.4
FAN13G1599 Fragaria x ananassa HOM05D017100 ORTHO05D008036 6.1e-07 58.2 94 37.2
FAN18G2618 Fragaria x ananassa HOM05D017100 ORTHO05D008036 6.1e-07 58.2 94 37.2
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 6.1e-07 58.2 36 69.4
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 6.1e-07 58.2 51 51.0
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 7.9e-07 57.8 57 45.6
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 7.9e-07 57.8 36 66.7
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 7.9e-07 57.8 51 51.0
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 7.9e-07 57.8 37 64.9
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.0e-06 57.4 55 45.5
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 1.0e-06 57.4 29 79.3
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.0e-06 57.4 29 72.4
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.0e-06 57.4 36 61.1
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 1.3e-06 57.0 102 31.4
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 1.3e-06 57.0 34 64.7
MSTRG.13877 Avicennia marina HOM05D007041 ORTHO05D008036 2.3e-06 56.2 47 51.1
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 2.3e-06 56.2 52 53.8
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.3e-06 56.2 56 53.6
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 2.3e-06 56.2 84 39.3
BcaB01g03218 Brassica carinata HOM05D010682 ORTHO05D012785 3.0e-06 55.8 54 50.0
Nitab4.5_0000223g0230 Nicotiana tabacum HOM05D007041 ORTHO05D008036 3.0e-06 55.8 41 65.9
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.0e-06 55.8 53 49.1
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 3.0e-06 55.8 47 51.1
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.9e-06 55.5 43 55.8
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.9e-06 55.5 43 55.8
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 3.9e-06 55.5 43 55.8
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 3.9e-06 55.5 29 72.4
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 3.9e-06 55.5 99 33.3
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 3.9e-06 55.5 70 41.4
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 5.1e-06 55.1 89 32.6
Nitab4.5_0004161g0040 Nicotiana tabacum HOM05D007041 ORTHO05D008036 6.7e-06 54.7 40 65.0
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 8.7e-06 54.3 39 56.4
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 8.7e-06 54.3 37 59.5
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 8.7e-06 54.3 48 47.9


User provided reference genes

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