Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 2241.5 1124 100.0
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 2201.8 1128 98.1
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 2181.0 1128 97.0
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 2128.2 1129 94.7
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 2116.3 1128 94.1
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 2078.9 1131 92.2
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 2078.9 1131 92.2
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 2060.8 1131 91.4
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 2059.6 1131 91.3
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1911.3 1104 89.3
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1901.7 1129 86.3
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1868.2 1128 82.4
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1803.1 1158 79.3
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1737.2 1122 77.2
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1733.0 1122 76.6
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1729.5 1121 75.9
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1726.8 1122 76.5
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1720.7 1129 76.0
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1720.3 1122 76.3
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1718.0 1117 76.2
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1717.6 1126 75.7
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1716.8 1095 77.5
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1712.6 1119 76.1
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1706.8 1122 75.3
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1705.3 1121 75.4
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1704.1 1121 75.2
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1699.5 1125 75.0
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1699.1 1122 75.1
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1699.1 1122 74.5
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1698.7 1122 75.7
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1692.9 1122 74.9
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1692.6 1132 75.1
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1691.0 1136 74.3
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1689.1 1118 74.9
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1688.3 1136 74.3
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1688.3 1123 75.2
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1687.9 1117 75.0
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1687.9 1123 75.7
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1684.5 1122 74.9
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1679.5 1124 74.3
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1678.7 1125 74.8
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1677.1 1122 74.6
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1673.7 1126 74.7
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1673.3 1122 74.6
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1673.3 1124 74.5
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1672.1 1123 75.4
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1670.6 1120 74.5
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1668.7 1182 71.1
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1664.8 1122 74.0
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1663.7 1122 74.2
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1663.3 867 95.0
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1662.5 1128 74.3
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1662.1 1125 73.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1661.0 1148 72.1
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1659.4 1128 74.2
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1654.0 1126 73.1
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1652.1 1126 73.2
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1651.0 1119 72.9
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1642.9 1120 73.4
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1642.9 1119 73.7
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1642.9 1121 72.6
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1640.2 1126 72.6
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1637.5 1116 73.4
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1633.6 1125 73.3
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1633.2 1129 72.8
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1632.1 1077 75.9
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1627.8 1124 72.2
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1627.8 1118 72.8
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1626.7 1125 72.4
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1625.9 1122 73.7
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1622.1 1117 72.7
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1621.7 1120 73.2
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1619.0 1074 75.1
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1617.4 1187 69.3
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1607.0 1123 70.7
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1602.8 1161 69.9
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1602.4 1122 70.5
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1598.9 1121 70.7
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1591.2 1040 75.8
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1587.0 1199 67.9
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1581.6 1123 70.5
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1580.5 1083 72.9
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1571.2 1119 70.2
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1557.0 1245 65.5
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1553.5 823 93.4
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1529.2 1322 62.6
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1525.4 1148 69.1
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1509.2 1122 69.4
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1508.8 1127 68.2
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1476.5 1139 65.9
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1464.9 952 76.5
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1464.9 1168 66.3
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1461.8 1122 66.1
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1450.3 1135 64.7
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1447.2 1127 64.7
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1389.8 1155 63.5
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1344.7 860 76.6
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1332.0 837 78.9
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1327.8 833 79.1
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1323.5 978 69.2
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1188.3 1120 58.1
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1131.3 782 72.0
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1108.6 679 80.1
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 1.5e-310 1069.7 1138 50.0
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.1e-295 1020.4 1124 49.7
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 5.7e-289 998.0 1521 40.8
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.1e-283 979.5 1152 47.0
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.2e-268 928.7 1145 44.8
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 1.7e-253 880.2 1394 38.1
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.8e-245 852.4 529 80.9
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.2e-243 847.4 668 63.0
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.8e-242 843.6 671 65.3
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.7e-241 838.6 585 73.7
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.8e-218 763.8 736 55.2
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 2.5e-196 690.3 587 60.6
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.0e-185 654.1 432 75.9
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 4.6e-182 642.9 451 69.4
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 2.2e-171 607.4 436 67.2
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.7e-168 597.8 589 51.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 4.8e-131 473.4 451 56.8
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 5.0e-128 463.4 296 74.3
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 9.2e-122 442.6 374 65.2
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 4.7e-118 430.3 332 69.9
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 1.0e-104 386.0 1109 28.9
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 5.6e-87 327.0 186 87.6
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 8.1e-86 323.2 781 31.6
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 1.7e-83 315.5 1451 23.6
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.2e-73 282.7 180 77.8
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 7.9e-73 280.0 289 52.2
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 9.0e-69 266.5 238 62.2
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 2.1e-62 245.4 217 69.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 2.1e-62 245.4 198 69.2
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 2.1e-57 228.8 217 65.4
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 2.1e-57 228.8 189 60.8
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 5.3e-53 214.2 298 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 6.5e-51 207.2 315 39.0
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.5e-47 196.1 212 49.5
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.4e-45 189.5 594 29.8
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 3.1e-45 188.3 328 40.9
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 7.4e-39 167.2 224 42.4
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.4e-37 162.9 743 25.0
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 3.5e-36 158.3 112 65.2
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.4e-32 146.4 183 49.2
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 5.2e-32 144.4 169 49.7
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 6.5e-27 127.5 74 90.5
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.7e-25 122.1 196 43.4
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 4.7e-25 121.3 84 70.2
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 4.0e-24 118.2 86 68.6
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 6.3e-22 110.9 86 67.4
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.4e-21 109.8 85 60.0
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.0e-19 103.6 64 73.4
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.2e-19 102.4 139 48.9
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.5e-18 99.0 67 74.6
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 3.0e-16 92.0 64 71.9
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 3.0e-16 92.0 69 63.8
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 8.8e-16 90.5 161 34.8
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 2.6e-15 89.0 95 50.5
A07p25530 Brassica napus HOM05D004297 ORTHO05D098686 4.1e-13 81.6 92 56.5
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 5.4e-13 81.3 60 66.7
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 9.1e-13 80.5 59 64.4
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 3.5e-12 78.6 56 67.9
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 8.6e-11 73.9 79 51.9
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 3.3e-10 72.0 52 63.5
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 9.5e-10 70.5 42 73.8
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 2.8e-09 68.9 34 82.4
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.5e-07 63.2 47 61.7
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.3e-06 60.1 80 42.5


User provided reference genes

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