Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G61177 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 1.2e-38 162.5 76 100.0
AT3G61175 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 5.0e-32 140.6 78 84.6
AL5G43420 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 8.6e-32 139.8 76 86.8
Carub.0230s0002 Capsella rubella HOM05D007747 ORTHO05D009997 4.9e-27 124.0 76 72.4
Thhalv10006351m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 7.3e-23 110.2 74 67.6
AT3G20993 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 3.1e-21 104.8 76 65.8
Carub.0001s1284 Capsella rubella HOM05D007747 ORTHO05D009997 2.0e-20 102.1 78 65.4
AL807U10010 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 4.4e-20 100.9 75 62.7
BcaB03g15568 Brassica carinata HOM05D007747 ORTHO05D009997 5.8e-20 100.5 74 60.8
CARHR096880 Cardamine hirsuta HOM05D007747 ORTHO05D009997 2.9e-19 98.2 76 59.2
AT3G20997 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 4.9e-19 97.4 75 58.7
CARHR101820 Cardamine hirsuta HOM05D007747 ORTHO05D009997 8.3e-19 96.7 76 57.9
A07p30920 Brassica napus HOM05D007747 ORTHO05D009997 1.1e-18 96.3 74 62.2
Carub.0001s1285 Capsella rubella HOM05D007747 ORTHO05D009997 1.1e-18 96.3 77 62.3
C06p35910 Brassica napus HOM05D007747 ORTHO05D009997 1.4e-18 95.9 74 62.2
C06p35890 Brassica napus HOM05D007747 ORTHO05D009997 1.2e-17 92.8 74 55.4
BraA07t30726Z Brassica rapa HOM05D007747 ORTHO05D009997 1.2e-17 92.8 74 55.4
BcaC08g45800 Brassica carinata HOM05D007747 ORTHO05D009997 1.6e-17 92.4 74 55.4
CARHR121310 Cardamine hirsuta HOM05D007747 ORTHO05D009997 2.1e-17 92.0 77 55.8
A07p30900 Brassica napus HOM05D007747 ORTHO05D009997 7.8e-17 90.1 74 54.1
BcaC08g45110 Brassica carinata HOM05D007747 ORTHO05D009997 3.3e-15 84.7 76 55.3
C06p27200 Brassica napus HOM05D007747 ORTHO05D009997 3.3e-15 84.7 76 55.3
Thhalv10029330m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 3.3e-15 84.7 76 52.6
Sp5g02207 Schrenkiella parvula HOM05D007747 ORTHO05D009997 7.3e-15 83.6 76 51.3
Thhalv10003401m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 2.1e-14 82.0 73 50.7
A07p25360 Brassica napus HOM05D007747 ORTHO05D009997 3.6e-14 81.3 76 53.9
BraA07t30181Z Brassica rapa HOM05D007747 ORTHO05D009997 3.6e-14 81.3 76 53.9
AL5G21430 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 4.7e-14 80.9 74 51.4
A05p05960 Brassica napus HOM05D007747 ORTHO05D009997 1.4e-13 79.3 76 52.6
BraA05t19559Z Brassica rapa HOM05D007747 ORTHO05D009997 1.4e-13 79.3 76 52.6
Sp5g02203 Schrenkiella parvula HOM05D009342 ORTHO05D009997 1.8e-13 79.0 77 50.6
AL5G21440 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 2.4e-13 78.6 78 48.7
BolC4t24705H Brassica oleracea HOM05D007747 ORTHO05D009997 8.9e-13 76.6 73 45.2
Carub.0002s0802 Capsella rubella HOM05D007747 ORTHO05D009997 1.2e-12 76.3 77 49.4
BcaB02g08951 Brassica carinata HOM05D007747 ORTHO05D009997 3.4e-12 74.7 76 50.0
BolC4t22310H Brassica oleracea HOM05D007747 ORTHO05D009997 3.4e-12 74.7 76 50.0
Thhalv10006468m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 3.4e-12 74.7 74 47.3
BcaC07g40621 Brassica carinata HOM05D009342 ORTHO05D009997 5.8e-12 73.9 77 49.4
A04p01250 Brassica napus HOM05D007747 ORTHO05D009997 5.8e-12 73.9 73 43.8
C08p36050 Brassica napus HOM05D009342 ORTHO05D009997 5.8e-12 73.9 77 49.4
BolC8t51185H Brassica oleracea HOM05D009342 ORTHO05D009997 5.8e-12 73.9 77 49.4
BraA04t15844Z Brassica rapa HOM05D007747 ORTHO05D009997 5.8e-12 73.9 73 43.8
A09p53240 Brassica napus HOM05D009342 ORTHO05D009997 1.3e-11 72.8 77 49.4
A04p01260 Brassica napus HOM05D007747 ORTHO05D028248 2.2e-11 72.0 78 48.7
BraA04t15845Z Brassica rapa HOM05D007747 ORTHO05D028248 2.2e-11 72.0 78 48.7
C06p27230 Brassica napus HOM05D007747 ORTHO05D009997 2.9e-11 71.6 59 55.9
C08p36030 Brassica napus HOM05D007747 ORTHO05D009997 2.9e-11 71.6 74 47.3
BraA07t30680Z Brassica rapa HOM05D007747 ORTHO05D009997 2.9e-11 71.6 80 47.5
AL2G27660 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 3.8e-11 71.2 74 44.6
A09p53230 Brassica napus HOM05D007747 ORTHO05D009997 3.8e-11 71.2 74 48.6
A07p30430 Brassica napus HOM05D007747 ORTHO05D009997 6.4e-11 70.5 80 46.2
BcaB07g30795 Brassica carinata HOM05D009342 ORTHO05D012604 8.4e-11 70.1 78 42.3
BcaC07g40620 Brassica carinata HOM05D007747 ORTHO05D009997 8.4e-11 70.1 74 45.9
C04p31610 Brassica napus HOM05D007747 ORTHO05D028248 8.4e-11 70.1 78 47.4
BolC4t24708H Brassica oleracea HOM05D007747 ORTHO05D028248 8.4e-11 70.1 78 47.4
AT3G43505 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 1.1e-10 69.7 78 42.3
BcaB06g28203 Brassica carinata HOM05D007747 ORTHO05D024130 1.1e-10 69.7 77 44.2
AT3G61172 Arabidopsis thaliana HOM05D009342 ORTHO05D009997 1.4e-10 69.3 77 45.5
Carub.0005s2783 Capsella rubella HOM05D009342 ORTHO05D009997 1.9e-10 68.9 77 48.1
THA.LOC104815826 Tarenaya hassleriana HOM05D013401 ORTHO05D009997 4.1e-10 67.8 77 42.9
Aa31LG10G15250 Aethionema arabicum HOM05D009342 ORTHO05D009997 7.1e-10 67.0 74 44.6
BolC6t37892H Brassica oleracea HOM05D007747 ORTHO05D009997 7.1e-10 67.0 76 47.4
Thhalv10017941m.g Eutrema salsugineum HOM05D007747 ORTHO05D014853 9.2e-10 66.6 73 43.8
C06p27260 Brassica napus HOM05D007747 ORTHO05D009997 1.2e-09 66.2 76 47.4
C06p27240 Brassica napus HOM05D007747 ORTHO05D009997 1.6e-09 65.9 76 47.4
BraA07t30180Z Brassica rapa HOM05D007747 ORTHO05D009997 1.6e-09 65.9 76 48.7
THA.LOC109116624 Tarenaya hassleriana HOM05D013401 ORTHO05D009997 1.6e-09 65.9 73 39.7
BcaB06g29617 Brassica carinata HOM05D016272 ORTHO05D014853 2.1e-09 65.5 77 41.6
A07p18970 Brassica napus HOM05D007747 ORTHO05D024130 2.7e-09 65.1 83 38.6
BolC6t37896H Brassica oleracea HOM05D007747 ORTHO05D009997 2.7e-09 65.1 76 46.1
BraA07t29602Z Brassica rapa HOM05D007747 ORTHO05D024130 2.7e-09 65.1 83 38.6
A07p25370 Brassica napus HOM05D007747 ORTHO05D009997 3.5e-09 64.7 76 46.1
A07p25380 Brassica napus HOM05D007747 ORTHO05D009997 3.5e-09 64.7 76 46.1
C06p27210 Brassica napus HOM05D007747 ORTHO05D009997 3.5e-09 64.7 76 46.1
C06p27220 Brassica napus HOM05D007747 ORTHO05D009997 3.5e-09 64.7 76 46.1
BraA07t30182Z Brassica rapa HOM05D007747 ORTHO05D009997 3.5e-09 64.7 76 46.1
Carub.0001s3631 Capsella rubella HOM05D007747 ORTHO05D014853 4.6e-09 64.3 78 44.9
BolC4t23792H Brassica oleracea HOM05D007747 ORTHO05D024130 6.0e-09 63.9 83 38.6
C06p27250 Brassica napus HOM05D007747 ORTHO05D009997 7.8e-09 63.5 76 46.1
Carub.0002s1314 Capsella rubella HOM05D007747 ORTHO05D009997 7.8e-09 63.5 80 43.8
AT3G61182 Arabidopsis thaliana HOM05D007747 ORTHO05D014853 1.3e-08 62.8 78 46.2
CARHR096870 Cardamine hirsuta HOM05D007747 ORTHO05D009997 1.3e-08 62.8 45 60.0
C04p22980 Brassica napus HOM05D007747 ORTHO05D024130 2.3e-08 62.0 83 37.3
C04p55800 Brassica napus HOM05D016272 ORTHO05D014853 2.3e-08 62.0 74 39.2
Carub.0005s2785 Capsella rubella HOM05D007747 ORTHO05D014853 8.7e-08 60.1 73 37.0
A04p20110 Brassica napus HOM05D016272 ORTHO05D014853 1.1e-07 59.7 74 37.8
AL8G18250 Arabidopsis lyrata HOM05D007747 ORTHO05D023629 1.5e-07 59.3 79 40.5
AL8G18260 Arabidopsis lyrata HOM05D007747 ORTHO05D023629 1.5e-07 59.3 79 40.5
A04p20120 Brassica napus HOM05D016272 ORTHO05D014853 1.5e-07 59.3 74 39.2
BolC4t27109H Brassica oleracea HOM05D016272 ORTHO05D014853 1.5e-07 59.3 74 39.2
CARHR171480 Cardamine hirsuta HOM05D007747 ORTHO05D009997 1.5e-07 59.3 57 45.6
AL5G43440 Arabidopsis lyrata HOM05D007747 ORTHO05D014853 2.5e-07 58.5 75 42.7
C04p55820 Brassica napus HOM05D016272 ORTHO05D014853 2.5e-07 58.5 76 42.1
BolC4t27108H Brassica oleracea HOM05D016272 ORTHO05D014853 2.5e-07 58.5 74 37.8
BolC6t38713H Brassica oleracea HOM05D007747 ORTHO05D009997 7.3e-07 57.0 48 52.1
Carub.0005s0920 Capsella rubella HOM05D007747 ORTHO05D009997 7.3e-07 57.0 69 40.6
AL5G43410 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 1.2e-06 56.2 56 51.8
CARHR286760 Cardamine hirsuta HOM05D009342 ORTHO05D009997 1.6e-06 55.8 74 39.2
AT5G47077 Arabidopsis thaliana HOM05D009342 ORTHO05D012604 8.1e-06 53.5 75 37.3


User provided reference genes

Program Settings