Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G61100 Arabidopsis thaliana HOM05D010965 ORTHO05D011781 1.4e-95 352.8 167 100.0
AL5G43310 Arabidopsis lyrata HOM05D010965 ORTHO05D011781 2.8e-75 285.4 161 82.6
AL5G43300 Arabidopsis lyrata HOM05D001456 ORTHO05D011781 8.2e-51 204.1 166 59.0
AT3G61090 Arabidopsis thaliana HOM05D001456 ORTHO05D011781 3.3e-44 182.2 166 52.4
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 5.5e-23 111.7 162 42.0
A09p52600 Brassica napus HOM05D016731 ORTHO05D011781 2.1e-22 109.8 169 39.1
A09p52620 Brassica napus HOM05D001456 ORTHO05D011781 2.7e-22 109.4 166 38.0
BraA09t40691Z Brassica rapa HOM05D001456 ORTHO05D011781 4.7e-22 108.6 166 38.0
BraA09t40690Z Brassica rapa HOM05D016731 ORTHO05D011781 6.7e-21 104.8 169 37.9
A09p52590 Brassica napus HOM05D001456 ORTHO05D011781 1.1e-20 104.0 163 36.8
C08p35340 Brassica napus HOM05D001456 ORTHO05D011781 4.4e-20 102.1 160 37.5
BolC8t51127H Brassica oleracea HOM05D001456 ORTHO05D011781 4.4e-20 102.1 160 37.5
BraA09t40689Z Brassica rapa HOM05D001456 ORTHO05D011781 4.4e-20 102.1 163 36.2
BcaC07g40423 Brassica carinata HOM05D016731 ORTHO05D011781 7.0e-18 94.7 165 38.8
CARHR167770 Cardamine hirsuta HOM05D001456 ORTHO05D011781 2.2e-16 89.7 164 36.6
Thhalv10006264m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 8.5e-16 87.8 171 37.4
Carub.0005s2774 Capsella rubella HOM05D034471 ORTHO05D033963 2.1e-14 83.2 71 53.5
AL5G20610 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 1.5e-12 77.0 158 34.2
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 1.5e-12 77.0 86 44.2
AL1G52920 Arabidopsis lyrata HOM05D001456 ORTHO05D012451 2.0e-12 76.6 164 31.7
AL5G20620 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 4.4e-12 75.5 154 33.1
AT3G62200 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 5.7e-12 75.1 167 30.5
AL5G44950 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 9.7e-12 74.3 167 30.5
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 9.7e-12 74.3 137 35.0
BraA04t16134Z Brassica rapa HOM05D010965 ORTHO05D024278 1.3e-11 73.9 167 32.3
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 4.8e-11 72.0 163 28.2
Sabra13G0002500 Salix brachista HOM05D001456 ORTHO05D002799 1.1e-10 70.9 164 29.9
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 1.4e-10 70.5 137 34.3
BraA04t16224Z Brassica rapa HOM05D010965 ORTHO05D016023 1.8e-10 70.1 157 30.6
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 3.1e-10 69.3 164 28.7
Manes.08G107800 Manihot esculenta HOM05D001456 ORTHO05D002799 3.1e-10 69.3 163 28.2
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 4.1e-10 68.9 106 36.8
C04p36520 Brassica napus HOM05D010965 ORTHO05D024278 4.1e-10 68.9 101 39.6
BolC4t25144H Brassica oleracea HOM05D010965 ORTHO05D024278 4.1e-10 68.9 101 39.6
Oeu000099.1 Olea europaea HOM05D001456 ORTHO05D002799 4.1e-10 68.9 162 28.4
AL5G44650 Arabidopsis lyrata HOM05D001456 ORTHO05D012062 5.3e-10 68.6 117 35.9
Potri.005G003800 Populus trichocarpa HOM05D001456 ORTHO05D002799 5.3e-10 68.6 163 28.8
BcaB07g31709 Brassica carinata HOM05D008913 ORTHO05D011317 7.0e-10 68.2 162 28.4
BcaC02g09794 Brassica carinata HOM05D010965 ORTHO05D024278 7.0e-10 68.2 101 38.6
Gohir.A12G120700 Gossypium hirsutum HOM05D001456 ORTHO05D002799 9.1e-10 67.8 163 28.8
Gohir.D12G124500 Gossypium hirsutum HOM05D001456 ORTHO05D002799 9.1e-10 67.8 163 28.8
Gorai.008G135500 Gossypium raimondii HOM05D001456 ORTHO05D002799 9.1e-10 67.8 163 28.8
Psat3g014920 Pisum sativum HOM05D001456 ORTHO05D002799 9.1e-10 67.8 163 26.4
A04p05130 Brassica napus HOM05D010965 ORTHO05D016023 1.2e-09 67.4 157 29.9
Duzib138G0531 Durio zibethinus HOM05D001456 ORTHO05D002799 1.2e-09 67.4 163 28.8
Sabra05G0001000 Salix brachista HOM05D001456 ORTHO05D002799 1.2e-09 67.4 163 28.2
Sabra05G0015100 Salix brachista HOM05D001456 ORTHO05D002799 1.2e-09 67.4 163 28.2
BraA08t33630Z Brassica rapa HOM05D001456 ORTHO05D002799 1.6e-09 67.0 161 29.8
COL.COLO4_23147 Corchorus olitorius HOM05D001456 ORTHO05D002799 1.6e-09 67.0 162 29.0
Lj9A230G20 Lonicera japonica HOM05D001456 ORTHO05D002799 1.6e-09 67.0 165 28.5
Lju99A5G39 Lonicera japonica HOM05D001456 ORTHO05D002799 1.6e-09 67.0 165 28.5
AL7G21380 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 2.0e-09 66.6 104 33.7
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 2.7e-09 66.2 163 28.8
AL1G58420 Arabidopsis lyrata HOM05D001456 ORTHO05D010099 3.5e-09 65.9 165 29.7
AT3G62050 Arabidopsis thaliana HOM05D001456 ORTHO05D012062 4.5e-09 65.5 117 31.6
BcaC02g09041 Brassica carinata HOM05D010965 ORTHO05D016023 4.5e-09 65.5 157 29.3
BolC4t25347H Brassica oleracea HOM05D010965 ORTHO05D016023 4.5e-09 65.5 157 29.3
CARHR172850 Cardamine hirsuta HOM05D021205 ORTHO05D018443 4.5e-09 65.5 159 28.9
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 4.5e-09 65.5 160 28.8
AL5G39230 Arabidopsis lyrata HOM05D001456 ORTHO05D012451 7.7e-09 64.7 112 37.5
Carub.0003s0625 Capsella rubella HOM05D001636 ORTHO05D009134 7.7e-09 64.7 156 26.3
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 7.7e-09 64.7 163 28.2
AL5G30040 Arabidopsis lyrata HOM05D001456 ORTHO05D018423 1.0e-08 64.3 159 28.9
AL5G35040 Arabidopsis lyrata HOM05D001456 ORTHO05D015898 1.0e-08 64.3 200 27.0
C03p85570 Brassica napus HOM05D001456 ORTHO05D002799 1.0e-08 64.3 159 29.6
BolC3t20845H Brassica oleracea HOM05D001456 ORTHO05D002799 1.0e-08 64.3 159 29.6
BraA06t23916Z Brassica rapa HOM05D008913 ORTHO05D011317 1.0e-08 64.3 162 25.9
Carub.0005s1718 Capsella rubella HOM05D001456 ORTHO05D011781 1.0e-08 64.3 172 29.1
Lalb_Chr06g0167321 Lupinus albus HOM05D001456 ORTHO05D002799 1.0e-08 64.3 163 28.2
Nn3g21907 Nelumbo nucifera HOM05D001456 ORTHO05D002799 1.0e-08 64.3 163 26.4
BcaB02g08395 Brassica carinata HOM05D010965 ORTHO05D016023 1.3e-08 63.9 150 32.7
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 1.3e-08 63.9 151 30.5
A06p07010 Brassica napus HOM05D008913 ORTHO05D011317 1.7e-08 63.5 162 25.9
BcaC02g09040 Brassica carinata HOM05D010965 ORTHO05D016023 2.2e-08 63.2 135 31.9
BcaB03g11817 Brassica carinata HOM05D001456 ORTHO05D002799 2.9e-08 62.8 159 28.3
BcaC01g02796 Brassica carinata HOM05D001636 ORTHO05D009134 2.9e-08 62.8 162 28.4
BcaC02g08726 Brassica carinata HOM05D001456 ORTHO05D031976 2.9e-08 62.8 100 40.0
C04p51270 Brassica napus HOM05D001456 ORTHO05D031976 2.9e-08 62.8 100 40.0
BolC4t26717H Brassica oleracea HOM05D001456 ORTHO05D031976 2.9e-08 62.8 100 40.0
BcaB02g08391 Brassica carinata HOM05D000018 ORTHO05D016023 3.8e-08 62.4 103 34.0
BcaB02g08393 Brassica carinata HOM05D010965 ORTHO05D016023 3.8e-08 62.4 96 35.4
BcaC03g13029 Brassica carinata HOM05D004310 ORTHO05D009268 3.8e-08 62.4 159 30.8
Carub.0005s1571 Capsella rubella HOM05D010352 ORTHO05D012062 3.8e-08 62.4 88 37.5
ATR0796G271 Amborella trichopoda HOM05D001456 ORTHO05D002799 5.0e-08 62.0 161 26.1
BraA10t45076Z Brassica rapa HOM05D001260 ORTHO05D002424 6.5e-08 61.6 178 27.5
Oeu036643.2 Olea europaea HOM05D001456 ORTHO05D002799 6.5e-08 61.6 171 28.1
A08p16650 Brassica napus HOM05D001456 ORTHO05D002799 8.5e-08 61.2 120 32.5
C02p17520 Brassica napus HOM05D001636 ORTHO05D009134 8.5e-08 61.2 164 28.7
AUR62002684 Chenopodium quinoa HOM05D001456 ORTHO05D002799 8.5e-08 61.2 167 26.9
A03p21410 Brassica napus HOM05D014187 ORTHO05D011865 1.1e-07 60.8 145 29.7
Lalb_Chr02g0147591 Lupinus albus HOM05D001456 ORTHO05D002799 1.1e-07 60.8 164 26.2
AL3G40410 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 1.5e-07 60.5 162 27.8
BcaC03g15053 Brassica carinata HOM05D001636 ORTHO05D009134 1.5e-07 60.5 164 29.9
C02p00800 Brassica napus HOM05D004310 ORTHO05D009268 1.5e-07 60.5 158 29.7
BolC2t08674H Brassica oleracea HOM05D001636 ORTHO05D009134 1.5e-07 60.5 164 29.9
CARHR166160 Cardamine hirsuta HOM05D011679 ORTHO05D012451 1.5e-07 60.5 178 30.9
AL8G35170 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 1.9e-07 60.1 162 27.8
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 1.9e-07 60.1 158 29.7
BraA03t11376Z Brassica rapa HOM05D014685 ORTHO05D011865 1.9e-07 60.1 145 29.7
AL5G44670 Arabidopsis lyrata HOM05D021205 ORTHO05D018443 2.5e-07 59.7 183 26.8
BolC4t24609H Brassica oleracea HOM05D001456 ORTHO05D012062 2.5e-07 59.7 117 31.6
BcaC01g02791 Brassica carinata HOM05D001636 ORTHO05D009134 3.2e-07 59.3 161 28.0
C03p60230 Brassica napus HOM05D001636 ORTHO05D009134 3.2e-07 59.3 161 28.0
C03p25280 Brassica napus HOM05D014685 ORTHO05D011865 4.2e-07 58.9 145 29.7
BolC3t14922H Brassica oleracea HOM05D014685 ORTHO05D011865 4.2e-07 58.9 145 29.7
CARHR172830 Cardamine hirsuta HOM05D001456 ORTHO05D011865 4.2e-07 58.9 146 34.2
BcaC01g04096 Brassica carinata HOM05D001636 ORTHO05D009134 5.5e-07 58.5 155 29.0
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 5.5e-07 58.5 107 31.8
CARHR265790 Cardamine hirsuta HOM05D001456 ORTHO05D018423 5.5e-07 58.5 159 26.4
Carub.0001s3469 Capsella rubella HOM05D001456 ORTHO05D010099 7.2e-07 58.2 144 34.0
BolC8t51128H Brassica oleracea HOM05D016731 ORTHO05D011781 9.4e-07 57.8 110 34.5
BolC9t58813H Brassica oleracea HOM05D008913 ORTHO05D011317 9.4e-07 57.8 169 27.2
Carub.0005s2878 Capsella rubella HOM05D001456 ORTHO05D012062 9.4e-07 57.8 115 27.8
AL1G58410 Arabidopsis lyrata HOM05D021205 ORTHO05D010099 1.2e-06 57.4 157 29.3
BcaC02g10275 Brassica carinata HOM05D001456 ORTHO05D012062 1.2e-06 57.4 102 33.3
BcaC03g14332 Brassica carinata HOM05D001636 ORTHO05D009134 1.2e-06 57.4 161 29.8
C02p17550 Brassica napus HOM05D001636 ORTHO05D009134 1.2e-06 57.4 164 27.4
C04p30870 Brassica napus HOM05D001456 ORTHO05D012062 1.2e-06 57.4 102 33.3
BolC2t07109H Brassica oleracea HOM05D007309 ORTHO05D040036 1.2e-06 57.4 107 30.8
BolC3t18292H Brassica oleracea HOM05D001636 ORTHO05D009134 1.2e-06 57.4 161 27.3
BolC7t45436H Brassica oleracea HOM05D001636 ORTHO05D009134 1.2e-06 57.4 166 27.7
BolC2t07887H Brassica oleracea HOM05D001636 ORTHO05D009134 1.6e-06 57.0 158 29.1
BraA03t14241Z Brassica rapa HOM05D001636 ORTHO05D009134 1.6e-06 57.0 159 27.7
C04p37700 Brassica napus HOM05D010965 ORTHO05D016023 2.1e-06 56.6 84 35.7
Phvul.001G217000 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 2.7e-06 56.2 170 26.5
BcaC03g14330 Brassica carinata HOM05D001636 ORTHO05D009134 3.6e-06 55.8 161 29.8
BcaC04g18794 Brassica carinata HOM05D008913 ORTHO05D011317 3.6e-06 55.8 161 25.5
AL8G41200 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 4.7e-06 55.5 105 39.0
AT4G30760 Arabidopsis thaliana HOM05D001456 ORTHO05D011865 4.7e-06 55.5 108 32.4
Ciclev10003599m.g Citrus clementina HOM05D001456 ORTHO05D002799 4.7e-06 55.5 157 26.1
Thhalv10023491m.g Eutrema salsugineum HOM05D020281 ORTHO05D021971 8.0e-06 54.7 92 41.3


User provided reference genes

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