Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 8.8e-51 203.4 106 100.0
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.4e-42 174.9 104 88.5
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 2.3e-35 152.1 105 79.0
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 4.4e-34 147.9 104 76.0
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 4.4e-34 147.9 104 75.0
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.2e-33 145.6 106 78.3
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 3.7e-33 144.8 99 78.8
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 8.3e-33 143.7 104 76.0
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 5.4e-32 141.0 104 73.1
BolC6t37870H Brassica oleracea HOM05D003683 ORTHO05D004143 1.7e-30 136.0 106 71.7
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 4.7e-28 127.9 94 74.5
BcaC08g45089 Brassica carinata HOM05D003683 ORTHO05D004143 6.2e-28 127.5 106 68.9
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 2.3e-27 125.6 94 75.5
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 6.8e-27 124.0 104 68.3
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 4.9e-25 117.9 105 66.7
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 8.3e-25 117.1 97 68.0
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.3e-17 93.2 95 61.1
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 4.9e-17 91.3 94 58.5
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 6.4e-17 90.9 97 57.7
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 6.4e-17 90.9 93 58.1
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 8.3e-17 90.5 95 57.9
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.4e-16 89.7 95 60.0
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.4e-16 89.7 100 57.0
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 2.4e-16 89.0 97 57.7
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.4e-16 89.0 97 58.8
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.4e-16 89.0 95 57.9
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-16 88.6 95 56.8
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.2e-16 88.6 95 56.8
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 5.4e-16 87.8 95 56.8
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 5.4e-16 87.8 97 57.7
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 5.4e-16 87.8 95 56.8
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 5.4e-16 87.8 95 56.8
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-15 86.3 97 56.7
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-15 86.3 97 56.7
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.7e-14 82.8 95 54.7
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 1.7e-14 82.8 49 83.7
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 8.6e-14 80.5 95 51.6
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 8.6e-14 80.5 95 51.6
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 5.6e-13 77.8 95 49.5
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 5.6e-13 77.8 95 49.5
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 5.6e-13 77.8 95 49.5
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.8e-12 75.5 95 52.6
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 2.0e-10 69.3 99 47.5
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.3e-09 66.6 74 56.8
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.3e-09 66.6 107 43.9
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-08 63.5 83 48.2
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-08 63.5 73 54.8
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.9e-08 62.8 108 38.0
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 2.4e-08 62.4 93 49.5
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.2e-08 62.0 99 38.4
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 3.2e-08 62.0 88 47.7
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 3.2e-08 62.0 78 46.2
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.2e-08 62.0 78 46.2
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.2e-08 62.0 78 46.2
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.2e-08 62.0 90 48.9
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 3.2e-08 62.0 64 48.4
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.1e-08 61.6 60 58.3
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.1e-08 61.6 107 41.1
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 5.4e-08 61.2 102 42.2
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.4e-08 61.2 98 40.8
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.4e-08 61.2 107 43.0
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 9.2e-08 60.5 87 46.0
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.2e-08 60.5 72 54.2
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 9.2e-08 60.5 109 42.2
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.2e-07 60.1 90 47.8
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.2e-07 60.1 81 46.9
THA.LOC104801993 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 1.2e-07 60.1 106 44.3
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.6e-07 59.7 78 46.2
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-07 59.7 78 44.9
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.6e-07 59.7 103 40.8
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.1e-07 59.3 79 44.3
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 2.1e-07 59.3 102 42.2
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.1e-07 59.3 94 43.6
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 2.1e-07 59.3 79 46.8
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.7e-07 58.9 73 50.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.5e-07 58.5 100 42.0
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.5e-07 58.5 91 46.2
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.5e-07 58.5 77 49.4
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 3.5e-07 58.5 62 51.6
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 4.6e-07 58.2 97 41.2
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.6e-07 58.2 94 43.6
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.6e-07 58.2 107 42.1
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 4.6e-07 58.2 66 53.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 4.6e-07 58.2 107 41.1
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 6.0e-07 57.8 65 49.2
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 6.0e-07 57.8 76 44.7
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.0e-07 57.8 98 41.8
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 7.8e-07 57.4 65 52.3
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 7.8e-07 57.4 101 40.6
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 7.8e-07 57.4 97 40.2
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 7.8e-07 57.4 89 46.1
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 7.8e-07 57.4 75 46.7
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 7.8e-07 57.4 54 53.7
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 7.8e-07 57.4 64 51.6
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.8e-07 57.4 98 41.8
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.0e-06 57.0 83 47.0
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.0e-06 57.0 102 41.2
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.0e-06 57.0 68 54.4
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.0e-06 57.0 66 48.5
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.3e-06 56.6 69 46.4
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 1.3e-06 56.6 61 49.2
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.3e-06 56.6 81 49.4
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 1.3e-06 56.6 102 36.3
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.3e-06 56.6 66 51.5
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.7e-06 56.2 69 50.7
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.7e-06 56.2 75 44.0
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.7e-06 56.2 100 42.0
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.7e-06 56.2 74 47.3
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.7e-06 56.2 74 52.7
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 2.3e-06 55.8 82 42.7
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 2.3e-06 55.8 72 45.8
PGR031G2056 Punica granatum HOM05D003683 ORTHO05D004143 2.3e-06 55.8 98 39.8
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.0e-06 55.5 69 46.4
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.0e-06 55.5 83 45.8
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 3.0e-06 55.5 105 41.0
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 3.0e-06 55.5 86 40.7
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 3.9e-06 55.1 74 47.3
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 3.9e-06 55.1 86 41.9
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 3.9e-06 55.1 70 51.4
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 3.9e-06 55.1 76 42.1
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 3.9e-06 55.1 72 45.8
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 3.9e-06 55.1 71 49.3
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 3.9e-06 55.1 67 50.7
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.1e-06 54.7 100 42.0
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.1e-06 54.7 83 45.8
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 6.6e-06 54.3 68 44.1
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 6.6e-06 54.3 44 65.9
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 6.6e-06 54.3 98 41.8
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 8.6e-06 53.9 100 40.0
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 8.6e-06 53.9 88 42.0


User provided reference genes

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