Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 0.0e+00 1315.8 649 100.0
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 0.0e+00 1231.1 650 94.2
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 0.0e+00 1119.8 665 84.5
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 0.0e+00 1082.0 654 84.4
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 0.0e+00 1080.1 654 83.0
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.0e-306 1056.2 653 82.1
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 4.5e-299 1030.8 653 80.1
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 2.1e-283 978.8 657 76.3
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 1.0e-282 976.5 654 76.6
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 2.3e-282 975.3 658 76.6
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 2.3e-282 975.3 658 76.6
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 2.3e-282 975.3 658 76.6
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 6.6e-282 973.8 655 76.8
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 3.2e-276 954.9 659 75.4
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.8e-271 939.1 658 72.6
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.3e-261 906.4 658 70.4
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.9e-261 904.4 658 70.4
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.9e-260 902.5 658 69.9
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 5.4e-260 901.0 659 70.0
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 3.6e-256 888.3 660 69.2
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 9.0e-255 883.6 663 69.5
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 2.6e-254 882.1 663 69.4
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 5.8e-254 880.9 661 69.0
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 9.9e-254 880.2 660 69.2
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.5e-251 871.7 652 69.9
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 5.1e-250 867.8 652 69.8
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 6.7e-250 867.5 661 69.7
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 6.7e-250 867.5 660 68.5
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.1e-249 866.7 658 71.1
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.9e-249 865.9 661 69.6
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 4.3e-249 864.8 658 71.0
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 4.3e-249 864.8 658 71.0
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.3e-249 864.8 661 69.6
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.6e-248 862.8 662 67.4
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.7e-248 861.7 660 69.2
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.7e-248 861.7 650 69.4
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 8.1e-248 860.5 657 67.3
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.1e-247 860.1 655 67.9
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-247 860.1 661 69.3
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 9.0e-247 857.1 665 67.7
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-246 856.7 661 69.1
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.0e-246 855.9 660 68.8
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 3.8e-245 851.7 651 68.0
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.9e-244 849.4 661 69.0
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.2e-243 846.7 668 67.7
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.1e-243 845.9 658 68.4
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 4.6e-243 844.7 651 68.0
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.1e-241 840.1 656 66.8
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.1e-241 840.1 656 66.8
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 4.3e-241 838.2 667 65.7
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 9.6e-241 837.0 552 74.3
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 2.8e-240 835.5 658 67.8
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 5.3e-239 831.2 656 67.1
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 6.9e-239 830.9 667 65.2
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.2e-238 830.1 617 68.9
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 2.0e-238 829.3 658 69.0
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 2.7e-235 818.9 565 71.9
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 3.0e-234 815.5 667 65.1
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 7.4e-233 810.8 561 72.5
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.3e-232 810.1 664 64.5
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 2.4e-231 805.8 661 65.2
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 5.3e-231 804.7 617 67.1
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 6.9e-231 804.3 665 64.2
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 7.7e-230 800.8 617 67.1
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 3.8e-229 798.5 669 63.8
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 5.0e-229 798.1 615 65.9
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.5e-229 797.7 669 63.8
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.4e-226 790.0 557 71.5
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 4.3e-225 785.0 659 62.7
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 4.3e-225 785.0 659 62.7
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 6.3e-224 781.2 639 64.6
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 5.3e-223 778.1 608 66.8
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 6.9e-223 777.7 562 69.6
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 6.9e-223 777.7 562 69.6
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 3.4e-222 775.4 534 72.5
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 7.7e-222 774.2 542 71.4
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.0e-221 773.9 566 70.8
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.2e-221 772.7 680 60.9
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 6.5e-221 771.2 552 69.0
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 8.5e-221 770.8 566 69.6
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.4e-220 770.0 559 68.7
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.4e-220 770.0 578 66.8
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.2e-220 768.8 681 61.8
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 7.2e-220 767.7 578 68.3
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 8.8e-218 760.8 616 65.1
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.1e-217 760.4 566 68.6
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.0e-217 759.6 557 69.1
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 5.7e-217 758.1 578 66.4
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 9.7e-217 757.3 681 61.1
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.4e-215 753.4 620 63.1
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 7.2e-212 741.1 655 62.3
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 8.0e-211 737.6 678 59.6
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 4.0e-210 735.3 605 62.3
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 8.8e-210 734.2 674 59.2
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.5e-209 733.4 554 67.3
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 1.5e-209 733.4 550 67.8
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 2.0e-209 733.0 550 68.0
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 4.4e-209 731.9 636 60.2
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 5.7e-209 731.5 616 61.9
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 7.4e-209 731.1 614 63.4
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.5e-204 716.1 619 62.7
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 6.1e-203 711.4 615 60.7
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.0e-202 710.7 520 70.0
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.6e-201 706.1 565 63.9
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.3e-200 703.7 668 57.5
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 8.3e-200 701.0 620 59.4
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 8.3e-200 701.0 651 57.9
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.2e-197 693.0 537 66.5
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 6.5e-197 691.4 658 61.2
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.5e-196 689.5 680 55.9
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.6e-195 685.6 668 56.7
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 9.5e-188 661.0 655 56.9
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.0e-186 657.5 561 63.1
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.2e-185 654.1 536 64.7
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 1.4e-183 647.1 661 55.1
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 7.8e-182 641.3 612 58.7
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 1.4e-178 630.6 690 53.5
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 5.2e-178 628.6 667 54.7
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.5e-172 610.5 637 54.0
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 2.3e-162 576.6 673 50.4
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 2.3e-162 576.6 645 52.1
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.5e-161 573.9 663 52.6
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 5.4e-159 565.5 505 61.0
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.2e-158 564.3 495 60.8
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 6.4e-152 542.0 433 64.2
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.6e-147 527.3 589 52.5
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 1.7e-144 517.3 424 65.3
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 7.4e-140 501.9 601 48.1
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 2.8e-123 446.8 344 66.9
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 3.7e-123 446.4 384 57.0
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.2e-121 441.4 409 55.7
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 4.1e-106 389.8 354 62.1
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.4e-98 364.8 297 63.0
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 5.2e-85 319.7 399 48.9
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 2.4e-74 284.3 653 34.3
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.2e-65 255.4 624 31.9
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 6.2e-62 243.0 166 77.1
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 3.8e-43 180.6 219 47.5
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 2.4e-42 177.9 194 51.0
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 3.0e-40 171.0 197 55.8
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 7.3e-31 139.8 296 31.4
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 2.8e-30 137.9 102 74.5
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 1.1e-26 125.9 77 79.2
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.5e-23 115.5 101 57.4
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 8.4e-19 99.8 134 44.8
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 2.1e-17 95.1 177 32.8
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 9.3e-10 69.7 150 36.0
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 2.3e-08 65.1 39 82.1
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 5.1e-08 63.9 57 59.6


User provided reference genes

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