Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 2431.0 1255 100.0
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 2339.7 1257 96.4
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 2238.8 1256 91.6
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 2234.1 1256 92.0
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 2105.9 1256 86.5
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 2083.9 1256 85.9
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 2058.5 1255 84.6
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 2022.3 1259 83.3
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2016.1 1259 83.2
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1999.2 1257 82.6
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1998.8 1257 82.6
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1961.8 1257 81.5
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1948.7 1188 85.0
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1905.2 1237 79.1
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1744.9 1242 72.5
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1723.8 1254 71.5
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1723.0 1248 71.1
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1718.0 1279 70.0
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1717.6 1278 70.0
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1713.0 1254 71.5
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1711.0 1278 70.0
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1711.0 1250 71.0
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1709.5 1281 70.1
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1708.0 1282 69.8
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1704.9 1254 70.5
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1704.9 1282 69.5
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1702.6 1278 68.9
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1701.4 1282 69.4
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1700.3 1287 68.8
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1691.8 1252 71.3
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1691.4 1246 70.2
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1688.7 1274 69.5
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1681.4 1260 69.9
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1666.0 1260 67.5
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1658.7 1275 67.5
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1657.1 1252 68.7
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1651.3 1264 67.5
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1651.0 1267 68.4
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1650.6 1259 67.4
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1650.2 1265 68.1
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1650.2 1263 67.1
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1649.0 1261 68.0
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1645.6 1269 67.5
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1645.6 1274 67.9
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1642.1 1271 66.5
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1641.3 1269 66.7
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1639.8 1267 67.6
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1633.6 1257 67.4
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1633.6 1255 67.3
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1631.7 1252 66.8
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1629.4 1252 66.8
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1629.0 1274 68.0
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1626.7 1280 68.4
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1625.5 1258 67.0
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1625.1 1277 66.9
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1619.8 1257 66.7
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1619.4 1283 65.8
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1609.3 1248 66.2
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1608.6 1254 66.1
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1605.5 1263 66.2
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1604.7 1320 64.9
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1602.0 1263 66.1
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1601.3 1327 64.0
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1601.3 1270 64.9
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1596.6 1292 65.1
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1595.9 1250 65.6
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1595.5 1256 65.1
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1592.0 1275 64.9
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1584.3 1224 68.2
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1582.8 1324 63.4
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1582.0 1270 64.4
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1581.2 1260 65.5
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1579.3 1240 65.6
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1567.4 1274 64.8
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1565.1 1254 65.4
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1565.1 1335 63.5
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1563.9 1258 65.1
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1562.4 1181 68.3
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1559.3 1323 63.3
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1556.2 1272 64.1
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1553.1 1171 68.1
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1528.5 1271 63.5
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1502.6 1258 62.6
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1484.5 1181 66.6
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1475.7 1294 61.1
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1467.6 1277 61.3
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1461.8 1190 64.2
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1414.1 1152 64.5
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1394.4 1248 60.3
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1388.6 1236 59.1
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1386.3 1008 71.0
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1380.5 1257 57.8
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1369.8 1261 58.4
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1369.0 1269 57.6
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1355.5 1026 68.0
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1243.4 1023 64.7
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1136.7 1235 52.5
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1135.9 890 66.0
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1124.4 1247 48.5
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1109.0 1258 48.3
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1104.7 960 59.9
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 1.1e-306 1057.0 958 61.5
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 1.5e-293 1013.4 886 61.4
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.5e-285 986.9 679 75.0
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.7e-279 966.1 799 63.0
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 5.7e-274 948.3 816 61.3
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 8.3e-273 944.5 1228 45.1
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 1.2e-268 930.6 543 87.8
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.1e-261 907.5 1214 44.6
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 9.5e-261 904.4 603 77.4
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 4.5e-210 736.1 1322 37.4
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 7.5e-181 639.0 1395 33.8
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 6.5e-177 625.9 490 67.8
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 2.3e-174 617.5 600 54.8
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.8e-172 610.5 1217 34.3
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 5.7e-165 586.3 496 63.3
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 6.2e-143 513.1 655 46.9
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.2e-127 459.9 327 70.3
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.1e-119 434.9 1156 30.2
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.9e-115 421.8 709 41.5
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 5.6e-112 410.2 284 73.2
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.5e-96 358.2 242 78.1
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.2e-91 340.9 339 54.9
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 3.9e-89 334.3 249 71.9
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 3.2e-83 314.7 266 60.9
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 3.2e-83 314.7 266 60.9
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 9.7e-72 276.6 262 55.0
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.1e-70 273.1 200 70.5
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.4e-65 256.1 157 81.5
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 1.8e-49 202.6 174 62.6
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.4e-48 198.4 104 90.4
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 8.3e-47 193.7 183 60.7
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.3e-43 181.8 160 61.9
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 9.5e-43 180.3 111 81.1
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.8e-41 176.0 117 79.5
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.0e-32 146.0 111 69.4
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 7.0e-30 137.5 1097 21.8
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.6e-29 136.3 162 53.1
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 5.4e-22 111.3 226 35.8
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 3.0e-20 105.5 142 43.0
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 8.6e-20 104.0 122 40.2
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.4e-17 96.7 120 49.2
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 3.8e-15 88.6 95 50.5
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 4.1e-14 85.1 113 39.8
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 5.4e-14 84.7 62 69.4
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 9.2e-14 84.0 73 64.4
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 3.5e-13 82.0 114 38.6
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.0e-12 80.5 122 40.2
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 3.3e-11 75.5 93 38.7
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 1.8e-09 69.7 47 72.3
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 5.2e-09 68.2 39 82.1
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 4.4e-08 65.1 83 48.2
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 1.3e-07 63.5 247 25.1
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.4e-06 60.1 158 32.9


User provided reference genes

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