Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.7e-146 522.7 273 100.0
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 5.6e-142 507.7 273 97.4
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.5e-134 482.3 273 92.7
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 7.4e-134 480.7 273 91.2
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 1.6e-133 479.6 273 90.1
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.3e-130 469.9 273 88.3
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 1.4e-129 466.5 275 88.7
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.9e-129 466.1 273 87.5
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 2.5e-126 455.7 273 86.4
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 9.7e-126 453.8 273 85.7
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 4.5e-123 444.9 338 71.9
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.3e-122 443.4 264 90.2
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.4e-116 423.3 264 87.9
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 5.9e-115 417.9 273 79.9
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 2.8e-109 399.1 271 75.6
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.2e-107 393.7 274 76.3
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 3.5e-107 392.1 267 77.5
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 2.5e-105 386.0 271 76.0
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.3e-103 379.4 273 72.2
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 3.9e-103 378.6 273 73.3
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 3.9e-103 378.6 273 72.9
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 2.6e-102 375.9 266 73.3
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 4.4e-102 375.2 273 71.1
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 4.4e-102 375.2 273 70.7
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.8e-101 372.5 273 72.5
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 3.7e-101 372.1 273 71.4
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 4.8e-101 371.7 273 71.4
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.4e-100 370.2 277 69.3
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 2.4e-100 369.4 270 69.3
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 4.1e-100 368.6 273 72.9
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 7.0e-100 367.9 273 69.6
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 9.1e-100 367.5 273 68.5
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.6e-99 366.7 274 69.0
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 4.5e-99 365.2 273 70.7
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.9e-99 364.8 268 70.5
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.3e-98 363.6 268 70.5
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.3e-98 363.6 273 68.9
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 5.0e-98 361.7 273 68.1
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 6.5e-98 361.3 278 67.6
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 8.5e-98 360.9 273 68.9
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.9e-97 359.8 271 69.4
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 5.5e-97 358.2 275 69.1
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 5.5e-97 358.2 273 68.5
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.5e-97 358.2 289 65.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 9.4e-97 357.5 263 69.6
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 1.6e-96 356.7 272 71.0
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 4.7e-96 355.1 271 72.0
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.8e-95 353.2 268 68.3
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 3.0e-95 352.4 268 69.8
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 8.8e-95 350.9 304 63.2
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.0e-94 349.7 279 66.7
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 2.6e-94 349.4 273 68.1
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.7e-94 348.2 279 66.3
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.7e-94 348.2 279 66.3
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.3e-93 347.1 281 68.3
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.7e-93 346.7 274 67.2
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 2.2e-93 346.3 274 67.2
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.3e-93 344.7 279 65.9
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 6.3e-93 344.7 271 67.2
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 5.3e-92 341.7 274 66.8
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 2.7e-91 339.3 271 66.4
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.7e-90 336.7 273 65.9
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 1.7e-90 336.7 273 65.6
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 2.2e-90 336.3 268 66.0
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 6.5e-90 334.7 271 65.3
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 7.2e-89 331.3 273 65.9
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.4e-89 330.9 289 63.3
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.2e-88 330.5 273 63.7
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.6e-88 330.1 271 64.2
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.6e-88 330.1 273 64.8
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 2.1e-88 329.7 273 64.8
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 2.1e-88 329.7 271 64.6
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 2.7e-88 329.3 273 63.7
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.7e-88 328.6 273 64.5
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 8.0e-88 327.8 266 65.0
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 8.0e-88 327.8 248 68.5
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.4e-87 327.0 248 68.1
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 6.8e-87 324.7 273 63.4
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.2e-86 323.9 273 62.6
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 2.6e-86 322.8 273 63.0
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 7.5e-86 321.2 275 61.5
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 1.3e-85 320.5 274 65.0
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 3.1e-84 315.8 272 61.0
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 5.5e-81 305.1 263 60.5
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 9.5e-81 304.3 222 71.2
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 2.2e-77 293.1 266 61.3
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 4.9e-77 292.0 273 60.8
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 4.1e-76 288.9 248 61.3
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 7.0e-76 288.1 279 56.3
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.4e-71 273.9 254 59.4
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 5.2e-71 271.9 271 54.6
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.4e-68 263.1 272 54.4
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 4.6e-67 258.8 292 52.7
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 5.6e-65 251.9 192 67.2
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.1e-64 250.0 184 69.6
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 5.8e-62 241.9 273 51.3
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.2e-61 240.0 248 55.6
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 8.3e-61 238.0 196 62.2
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 3.9e-58 229.2 249 55.4
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.4e-55 220.7 263 46.4
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.5e-54 217.2 201 60.2
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 9.9e-54 214.5 273 45.4
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 2.3e-50 203.4 261 42.9
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 4.7e-48 195.7 145 67.6
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 2.6e-46 189.9 229 45.9
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 2.5e-41 173.3 353 38.2
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.4e-36 156.8 115 73.9
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.4e-36 155.6 115 73.0
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.1e-35 153.7 141 61.0
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.0e-34 149.8 132 59.8
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 1.9e-33 147.1 112 68.8
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.6e-32 144.1 108 70.4
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 1.7e-29 134.0 84 79.8
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 2.9e-29 133.3 149 53.0
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 4.9e-29 132.5 93 71.0
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 4.9e-29 132.5 160 46.2
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 3.2e-28 129.8 153 50.3
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.8e-26 124.0 80 83.8
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.1e-25 121.3 107 63.6
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 2.4e-23 113.6 272 31.6
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 1.5e-22 110.9 253 30.4
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 2.0e-22 110.5 108 58.3
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 3.4e-22 109.8 74 77.0
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 5.8e-22 109.0 104 55.8
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.0e-21 108.2 116 56.0
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.0e-21 108.2 110 57.3
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 3.8e-21 106.3 74 75.7
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 5.5e-20 102.4 103 60.2
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.2e-19 101.3 66 74.2
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.5e-19 99.8 60 76.7
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 3.5e-19 99.8 56 89.3
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.3e-16 91.3 69 60.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 3.0e-10 70.1 82 50.0
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 8.7e-10 68.6 140 37.9
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.9e-09 67.4 148 34.5


User provided reference genes

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