Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 1.1e-56 223.0 112 100.0
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 2.9e-52 208.4 111 94.6
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 3.0e-49 198.4 110 90.9
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 7.4e-48 193.7 111 85.6
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 8.5e-44 180.3 110 77.3
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 4.2e-43 177.9 113 76.1
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 4.6e-42 174.5 113 76.1
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.8e-41 172.6 110 75.5
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 3.7e-39 164.9 133 63.2
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 7.2e-35 150.6 113 63.7
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 5.1e-33 144.4 85 78.8
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 8.8e-33 143.7 83 81.9
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 8.2e-23 110.5 85 60.0
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 8.2e-23 110.5 85 58.8
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 2.6e-21 105.5 87 60.9
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 2.6e-21 105.5 84 58.3
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 4.5e-21 104.8 79 62.0
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 4.5e-21 104.8 85 55.3
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 5.9e-21 104.4 90 56.7
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 5.9e-21 104.4 102 49.0
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 7.7e-21 104.0 84 56.0
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 7.7e-21 104.0 83 59.0
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 1.3e-20 103.2 94 52.1
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.3e-20 103.2 100 54.0
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 1.3e-20 103.2 85 57.6
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 3.8e-20 101.7 102 51.0
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 5.0e-20 101.3 80 58.8
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 6.5e-20 100.9 101 49.5
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 8.5e-20 100.5 101 48.5
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.1e-19 100.1 94 47.9
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.5e-19 99.8 104 45.2
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 1.5e-19 99.8 90 52.2
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 2.5e-19 99.0 77 63.6
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.2e-19 98.2 101 47.5
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 5.5e-19 97.8 105 44.8
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 9.4e-19 97.1 104 46.2
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.2e-18 96.7 88 53.4
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.6e-18 96.3 74 56.8
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 2.1e-18 95.9 84 56.0
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 2.1e-18 95.9 87 52.9
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 2.7e-18 95.5 70 65.7
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 2.7e-18 95.5 92 47.8
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 3.6e-18 95.1 70 64.3
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 3.6e-18 95.1 104 46.2
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 6.1e-18 94.4 70 62.9
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 8.0e-18 94.0 95 48.4
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 8.0e-18 94.0 95 48.4
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 8.0e-18 94.0 89 55.1
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.0e-17 93.6 88 52.3
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 1.4e-17 93.2 103 49.5
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 2.3e-17 92.4 108 47.2
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 2.3e-17 92.4 104 49.0
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.3e-17 92.4 101 46.5
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 5.2e-17 91.3 77 59.7
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 1.2e-16 90.1 104 46.2
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 1.5e-16 89.7 95 49.5
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.5e-16 89.7 81 54.3
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 2.0e-16 89.4 106 45.3
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 4.4e-16 88.2 75 61.3
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 7.5e-16 87.4 83 51.8
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 7.5e-16 87.4 96 50.0
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 2.2e-15 85.9 80 52.5
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 2.8e-15 85.5 104 43.3
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 8.2e-15 84.0 72 54.2
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.1e-14 83.6 84 51.2
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 1.8e-14 82.8 77 51.9
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 1.8e-14 82.8 62 61.3
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.8e-14 82.8 80 51.2
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 2.4e-14 82.4 62 61.3
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 2.4e-14 82.4 80 50.0
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.1e-14 82.0 103 47.6
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.1e-14 82.0 103 47.6
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 3.1e-14 82.0 103 46.6
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 4.1e-14 81.6 79 49.4
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.1e-14 81.6 103 47.6
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.1e-14 81.6 103 47.6
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 7.0e-14 80.9 59 57.6
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 1.6e-13 79.7 80 50.0
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 2.0e-13 79.3 102 45.1
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.0e-13 79.3 102 45.1
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.0e-13 79.3 102 45.1
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 3.5e-13 78.6 85 48.2
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 3.5e-13 78.6 79 48.1
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 3.5e-13 78.6 79 54.4
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 3.5e-13 78.6 100 41.0
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 7.7e-13 77.4 84 48.8
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 1.3e-12 76.6 79 49.4
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 2.9e-12 75.5 67 52.2
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 6.5e-12 74.3 77 48.1
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.1e-11 73.6 86 48.8
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.1e-11 73.6 66 56.1
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 1.5e-11 73.2 62 56.5
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 1.5e-11 73.2 61 54.1
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 1.5e-11 73.2 61 54.1
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 5.5e-11 71.2 79 49.4
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.1e-10 69.3 63 49.2
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.1e-10 69.3 63 49.2
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 3.6e-10 68.6 86 47.7
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 3.6e-10 68.6 76 46.1
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 3.6e-10 68.6 55 60.0
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 8.0e-10 67.4 82 43.9
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 1.0e-09 67.0 78 46.2
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 8.8e-09 63.9 78 43.6
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 8.8e-09 63.9 55 58.2
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 1.2e-08 63.5 68 48.5
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 9.8e-08 60.5 86 39.5
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 1.7e-07 59.7 75 49.3
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 3.7e-07 58.5 50 56.0
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 5.4e-06 54.7 45 60.0


User provided reference genes

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