Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 2.9e-123 445.3 229 100.0
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 1.1e-117 426.8 229 95.2
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.3e-112 409.1 229 90.8
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 4.5e-108 394.8 229 87.3
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 4.5e-108 394.8 229 87.3
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 9.9e-108 393.7 229 86.0
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 1.7e-107 392.9 229 86.0
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 2.9e-107 392.1 229 85.6
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 8.4e-107 390.6 229 86.0
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 1.4e-106 389.8 229 85.2
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.9e-106 389.4 229 85.6
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 3.2e-106 388.7 229 85.6
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 4.2e-106 388.3 229 84.7
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 2.7e-105 385.6 229 84.7
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 3.5e-105 385.2 229 83.8
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 6.0e-105 384.4 229 83.8
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 6.7e-88 327.8 231 70.1
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 5.9e-84 314.7 232 69.8
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 4.4e-79 298.5 230 64.8
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 7.4e-79 297.7 231 66.7
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 2.8e-78 295.8 230 65.2
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 2.4e-77 292.7 230 64.8
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 3.1e-77 292.4 230 65.2
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 5.3e-77 291.6 229 63.3
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 7.0e-77 291.2 230 63.5
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 7.0e-77 291.2 230 63.0
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.2e-76 290.4 230 63.5
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 1.5e-76 290.0 230 64.8
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.0e-76 289.7 230 63.5
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 2.0e-76 289.7 230 62.6
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 2.6e-76 289.3 229 63.3
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 3.5e-76 288.9 230 63.0
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 3.5e-76 288.9 230 63.5
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 4.5e-76 288.5 230 63.9
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 4.5e-76 288.5 230 63.9
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.9e-76 288.1 230 63.5
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 7.7e-76 287.7 229 62.9
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 1.3e-75 287.0 230 63.5
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 1.3e-75 287.0 230 63.9
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.7e-75 286.6 230 63.5
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 2.2e-75 286.2 229 62.9
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 2.2e-75 286.2 230 63.5
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 2.2e-75 286.2 229 62.4
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 2.2e-75 286.2 230 63.9
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.9e-75 285.8 230 63.0
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 5.0e-75 285.0 231 64.5
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 5.0e-75 285.0 230 61.3
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 5.0e-75 285.0 230 62.2
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 8.5e-75 284.3 230 63.0
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 1.1e-74 283.9 230 61.7
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.1e-74 283.9 228 62.3
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 1.4e-74 283.5 232 61.6
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 1.9e-74 283.1 230 61.3
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 3.2e-74 282.3 232 60.3
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.2e-74 282.3 230 63.0
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 4.2e-74 282.0 229 61.1
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 4.2e-74 282.0 231 62.8
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 4.2e-74 282.0 230 61.7
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 4.2e-74 282.0 230 60.9
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 5.5e-74 281.6 232 59.9
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 7.2e-74 281.2 229 61.6
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 7.2e-74 281.2 230 61.7
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.2e-73 280.4 229 61.6
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 1.2e-73 280.4 230 63.5
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 2.1e-73 279.6 230 60.9
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 6.1e-73 278.1 230 60.9
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 8.0e-73 277.7 230 61.3
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 1.0e-72 277.3 230 60.4
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 2.3e-72 276.2 230 60.9
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 2.3e-72 276.2 230 60.4
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 2.3e-72 276.2 231 61.5
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 3.0e-72 275.8 230 62.2
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 3.9e-72 275.4 231 61.0
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 8.8e-72 274.2 231 62.3
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 1.5e-71 273.5 229 59.8
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 4.4e-71 271.9 230 59.6
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 4.4e-71 271.9 230 60.4
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 9.7e-71 270.8 229 59.0
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 9.7e-71 270.8 249 56.6
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 1.3e-70 270.4 234 60.3
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 2.2e-70 269.6 232 59.1
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 3.7e-70 268.9 230 58.3
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 4.8e-70 268.5 231 60.2
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 4.8e-70 268.5 238 58.8
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 8.2e-70 267.7 175 80.0
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 1.4e-69 266.9 218 63.3
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.8e-69 266.5 230 58.3
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.8e-69 266.5 254 55.5
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 2.4e-69 266.2 229 58.1
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 3.1e-69 265.8 252 55.2
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 7.0e-69 264.6 230 58.3
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 9.1e-69 264.2 230 57.8
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.0e-68 263.1 231 58.9
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 3.5e-68 262.3 230 57.0
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 3.5e-68 262.3 263 55.1
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.2e-67 259.6 230 56.5
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.9e-66 256.5 230 56.1
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 2.5e-66 256.1 230 57.0
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 7.2e-66 254.6 230 57.4
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.0e-64 250.8 218 58.3
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 8.8e-64 247.7 230 57.8
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 2.2e-62 243.0 138 89.1
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 8.3e-62 241.1 236 53.8
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.0e-60 236.5 215 57.2
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 5.9e-60 235.0 307 44.6
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 7.7e-60 234.6 199 58.8
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 8.5e-59 231.1 214 57.0
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.5e-58 230.3 318 43.7
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.2e-57 227.3 360 38.6
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.7e-54 216.9 230 51.3
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 4.5e-52 208.8 232 50.4
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 7.7e-52 208.0 180 60.0
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.7e-51 206.8 232 46.1
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 4.2e-50 202.2 181 57.5
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 7.2e-50 201.4 235 47.2
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.6e-49 200.3 166 60.2
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 9.8e-47 191.0 228 48.7
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.8e-46 189.5 164 60.4
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 1.2e-44 184.1 164 57.9
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 7.8e-44 181.4 138 63.8
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 7.8e-44 181.4 141 62.4
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.0e-43 181.0 140 62.1
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 2.5e-42 176.4 282 38.3
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 9.5e-42 174.5 234 42.3
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 3.6e-41 172.6 164 54.9
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 1.2e-39 167.5 117 68.4
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 7.5e-39 164.9 110 70.0
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 3.7e-38 162.5 241 42.3
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 5.4e-37 158.7 151 53.6
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 9.2e-37 157.9 243 41.2
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.3e-32 143.3 140 53.6
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 2.3e-32 143.3 266 37.2
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 3.4e-31 139.4 215 40.0
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 6.4e-30 135.2 291 33.3
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 4.1e-29 132.5 156 44.9
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.5e-23 114.0 102 57.8
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.0e-23 113.6 120 49.2
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 4.4e-23 112.5 71 74.6
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 9.9e-23 111.3 83 62.7
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.3e-22 110.9 125 49.6
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.1e-16 91.3 97 52.6
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.3e-14 84.3 66 57.6
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 3.8e-14 82.8 80 56.2
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 8.4e-14 81.6 71 53.5
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 2.4e-13 80.1 62 59.7
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 6.0e-12 75.5 137 35.8
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 6.0e-12 75.5 54 63.0
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 6.0e-12 75.5 69 58.0
CARHR037650 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.0e-11 74.7 53 71.7
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 2.3e-11 73.6 72 50.0
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 3.9e-11 72.8 105 44.8
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 5.1e-11 72.4 65 53.8
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.3e-09 67.8 58 55.2
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 2.2e-06 57.0 91 36.3
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 2.2e-06 57.0 61 45.9
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 6.4e-06 55.5 38 60.5


User provided reference genes

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