Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.3e-196 688.7 350 100.0
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.4e-184 648.3 350 94.9
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 2.0e-176 622.5 344 91.9
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 7.6e-176 620.5 350 90.9
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 4.6e-173 611.3 350 87.7
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.5e-168 596.3 350 88.9
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 1.5e-163 579.7 350 83.1
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.4e-163 578.2 351 84.0
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 1.3e-162 576.6 346 86.7
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 8.2e-162 573.9 348 86.2
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.4e-161 573.2 351 84.9
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 3.1e-161 572.0 351 83.5
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 4.1e-161 571.6 348 85.9
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 6.9e-161 570.9 351 84.3
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.2e-160 570.1 348 84.8
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.5e-160 569.7 348 85.3
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 1.5e-160 569.7 346 86.1
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 6.5e-159 564.3 348 85.1
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.1e-158 563.5 345 84.3
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 2.3e-156 555.8 348 81.3
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 4.4e-155 551.6 349 82.5
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 3.7e-154 548.5 341 83.3
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 4.8e-154 548.1 341 83.6
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 1.8e-153 546.2 341 83.0
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 5.3e-153 544.7 346 82.9
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 8.5e-143 510.8 340 79.4
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.8e-138 495.0 349 73.1
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 6.3e-138 494.6 349 73.1
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 1.1e-137 493.8 324 76.5
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 4.1e-137 491.9 304 80.3
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.6e-136 490.0 349 71.9
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.7e-136 489.2 346 72.3
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 5.9e-136 488.0 336 72.6
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.9e-136 488.0 349 71.9
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 1.0e-135 487.3 298 81.2
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.3e-135 486.9 346 71.7
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 6.5e-135 484.6 334 76.6
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 8.6e-135 484.2 330 74.5
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 2.5e-134 482.6 298 80.2
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 2.1e-133 479.6 300 79.3
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.7e-133 478.4 341 71.3
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 6.1e-133 478.0 304 78.6
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 6.1e-133 478.0 276 84.1
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 6.1e-133 478.0 298 79.5
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 3.0e-132 475.7 276 83.7
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 8.9e-132 474.2 331 72.5
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 2.0e-131 473.0 302 76.8
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 4.4e-131 471.9 276 83.0
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 4.4e-131 471.9 302 76.5
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.8e-131 470.7 339 71.1
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 9.8e-131 470.7 277 82.3
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.7e-130 469.9 301 75.4
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.2e-130 469.5 328 72.9
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 6.3e-130 468.0 276 82.6
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 8.3e-130 467.6 276 81.2
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.8e-129 466.5 329 71.7
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 2.4e-129 466.1 351 68.4
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 2.4e-129 466.1 276 81.9
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 7.0e-129 464.5 276 81.9
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 9.2e-129 464.2 295 78.3
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 3.5e-128 462.2 356 68.3
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 4.5e-128 461.8 352 69.0
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 5.9e-128 461.5 276 81.2
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 5.9e-128 461.5 352 68.8
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 1.3e-127 460.3 299 76.3
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 2.9e-127 459.1 277 81.6
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.6e-127 457.6 320 74.1
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 8.6e-127 457.6 354 68.1
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 8.6e-127 457.6 329 72.3
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.1e-126 457.2 328 69.2
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.5e-126 456.8 277 80.9
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.9e-126 456.4 300 75.0
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.5e-126 456.1 276 80.4
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 5.6e-126 454.9 352 67.6
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 5.6e-126 454.9 276 80.4
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 9.5e-126 454.1 287 76.3
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 9.5e-126 454.1 277 79.8
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 1.2e-125 453.8 330 71.2
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.2e-125 453.8 337 70.3
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.6e-125 453.4 277 80.1
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 2.1e-125 453.0 352 66.8
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 2.1e-125 453.0 276 80.1
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 8.0e-125 451.1 308 72.1
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.0e-124 450.7 330 70.3
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.0e-124 450.7 298 75.8
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.0e-124 450.7 275 80.4
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.4e-124 450.3 330 69.4
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 2.3e-124 449.5 313 70.6
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 3.0e-124 449.1 274 78.8
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 4.0e-124 448.7 299 73.9
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 5.2e-124 448.4 277 79.4
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 5.2e-124 448.4 274 79.6
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 5.2e-124 448.4 339 69.3
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.5e-123 446.8 277 78.7
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 2.6e-123 446.0 291 75.6
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 2.6e-123 446.0 282 77.0
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 4.4e-123 445.3 295 76.3
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 7.5e-123 444.5 276 77.9
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.3e-122 443.7 276 78.3
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 2.2e-122 443.0 314 70.7
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 2.2e-122 443.0 299 73.6
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 4.9e-122 441.8 276 77.5
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.1e-121 440.7 276 78.6
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 1.4e-121 440.3 323 68.4
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 5.4e-121 438.3 276 76.1
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 1.6e-120 436.8 276 76.4
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.0e-119 434.1 313 69.3
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.3e-119 433.7 274 76.3
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 5.0e-119 431.8 304 70.4
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 4.3e-118 428.7 290 72.8
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 5.6e-118 428.3 265 78.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 1.2e-117 427.2 282 72.0
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 1.2e-117 427.2 274 76.3
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.1e-117 426.4 304 69.7
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.8e-117 426.0 301 69.8
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 3.6e-117 425.6 274 74.1
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 2.3e-116 422.9 331 65.6
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 3.4e-115 419.1 274 73.4
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 5.8e-115 418.3 278 75.2
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.3e-114 417.2 254 79.9
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.2e-114 416.4 274 72.6
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.3e-114 414.5 256 79.3
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 4.1e-113 412.1 275 75.3
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 4.1e-113 412.1 274 72.3
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 4.6e-112 408.7 287 68.3
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 6.0e-112 408.3 287 68.3
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 1.0e-111 407.5 315 67.0
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 1.7e-111 406.8 271 74.5
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 2.8e-109 399.4 263 74.1
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.4e-108 397.1 306 64.1
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 5.8e-107 391.7 274 69.0
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 2.9e-106 389.4 313 65.2
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 6.4e-106 388.3 256 73.0
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.1e-105 387.5 306 65.0
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.6e-104 383.6 297 63.0
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.0e-99 366.7 241 75.9
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.1e-94 350.9 224 75.4
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 2.8e-93 346.3 345 53.3
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 3.4e-91 339.3 274 60.2
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 3.8e-90 335.9 322 53.4
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 7.1e-89 331.6 186 84.9
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 2.7e-80 303.1 282 56.7
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 6.0e-80 302.0 189 77.2
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 7.9e-80 301.6 187 79.7
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.9e-79 299.3 278 54.3
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 1.6e-77 293.9 325 57.2
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 8.1e-77 291.6 241 63.1
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.3e-74 284.3 285 48.1
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.4e-73 280.8 288 53.1
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.1e-69 266.9 239 62.3
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 2.0e-67 260.4 218 64.2
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 9.3e-65 251.5 174 73.6
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.9e-62 243.8 224 60.7
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.3e-58 231.1 159 71.7
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 4.2e-57 226.1 123 87.8
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 2.1e-48 197.2 175 60.6
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 6.7e-47 192.2 164 57.9
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 7.2e-41 172.2 188 51.1
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 4.8e-37 159.5 90 82.2
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.4e-36 157.9 138 58.7
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 1.6e-32 144.4 77 87.0
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.4e-31 141.4 280 32.9
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.0e-26 125.2 89 70.8
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.2e-24 118.2 75 76.0
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.7e-24 117.1 68 82.4
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.8e-23 114.4 152 44.1
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.0e-22 110.9 164 40.2
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 7.0e-20 102.4 66 80.3
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.6e-14 84.0 83 50.6
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 7.0e-12 75.9 179 31.8
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.5e-09 68.2 81 45.7
Lsat_1_v5_gn_5_112181 Lactuca sativa HOM05D002510 ORTHO05D007210 4.4e-06 56.6 31 80.6


User provided reference genes

Program Settings