Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G59680 Arabidopsis thaliana HOM05D007215 ORTHO05D009019 6.4e-123 444.1 230 100.0
AL5G41750 Arabidopsis lyrata HOM05D007215 ORTHO05D009019 1.6e-89 333.2 192 91.7
A09p52000 Brassica napus HOM05D007215 ORTHO05D009019 2.0e-87 326.2 227 78.0
BraA09t40633Z Brassica rapa HOM05D007215 ORTHO05D009019 3.7e-86 322.0 226 77.9
C08p34680 Brassica napus HOM05D007215 ORTHO05D009019 3.1e-85 318.9 227 76.7
Carub.0005s2640 Capsella rubella HOM05D007215 ORTHO05D009019 8.8e-80 300.8 196 82.1
BcaC07g40499 Brassica carinata HOM05D007215 ORTHO05D009019 4.7e-73 278.5 187 79.7
BolC8t51070H Brassica oleracea HOM05D007215 ORTHO05D009019 4.7e-73 278.5 187 79.7
Thhalv10006255m.g Eutrema salsugineum HOM05D007215 ORTHO05D009019 8.0e-73 277.7 186 79.6
Sp5g03500 Schrenkiella parvula HOM05D007215 ORTHO05D009019 1.6e-68 263.5 227 67.8
CARHR170050 Cardamine hirsuta HOM05D007215 ORTHO05D009019 2.1e-65 253.1 200 72.0
Aa31LG10G13970 Aethionema arabicum HOM05D007215 ORTHO05D009019 2.7e-52 209.5 182 66.5
THA.LOC104804037 Tarenaya hassleriana HOM05D007215 ORTHO05D009019 3.3e-50 202.6 197 64.0
QL10p055936 Quercus lobata HOM05D007215 ORTHO05D009019 3.6e-41 172.6 197 54.8
Glyma.07G207400 Glycine max HOM05D007215 ORTHO05D009019 8.1e-41 171.4 208 53.8
VMungo0251G1340 Vigna mungo HOM05D007215 ORTHO05D009019 1.1e-40 171.0 209 54.5
Glyma.02G137900 Glycine max HOM05D007215 ORTHO05D009019 2.3e-40 169.9 212 52.4
Medtr4g087380 Medicago truncatula HOM05D007215 ORTHO05D009019 4.0e-40 169.1 209 52.6
Phvul.003G297000 Phaseolus vulgaris HOM05D007215 ORTHO05D009019 8.9e-40 167.9 213 52.1
Cfa015271 Carpinus fangiana HOM05D007215 ORTHO05D009019 3.4e-39 166.0 196 54.6
Sed0003072 Sechium edule HOM05D007215 ORTHO05D009019 3.4e-39 166.0 207 49.8
ClCG06G001110 Citrullus lanatus HOM05D007215 ORTHO05D009019 4.4e-39 165.6 211 49.8
Psat7g121080 Pisum sativum HOM05D007215 ORTHO05D009019 4.4e-39 165.6 209 51.2
Atru.chr4.1429 Acer truncatum HOM05D007215 ORTHO05D009019 7.5e-39 164.9 212 50.9
Lalb_Chr05g0218881 Lupinus albus HOM05D007215 ORTHO05D009019 2.2e-38 163.3 223 52.0
MSTRG.9732 Avicennia marina HOM05D007215 ORTHO05D009019 3.7e-38 162.5 229 49.8
Sc25g0002820 Simmondsia chinensis HOM05D007215 ORTHO05D009019 4.9e-38 162.2 199 51.3
TPR.G23547 Trifolium pratense HOM05D002328 ORTHO05D009019 3.2e-37 159.5 214 49.5
EL10Ac3g06096 Beta vulgaris HOM05D007215 ORTHO05D009019 4.1e-37 159.1 202 51.0
Gorai.011G135400 Gossypium raimondii HOM05D007215 ORTHO05D009019 4.1e-37 159.1 212 48.1
Gohir.A10G144100 Gossypium hirsutum HOM05D007215 ORTHO05D009019 9.2e-37 157.9 212 48.1
FAN17G2642 Fragaria x ananassa HOM05D007215 ORTHO05D009019 3.5e-36 156.0 211 48.8
HanXRQChr04g0110541 Helianthus annuus HOM05D007215 ORTHO05D009019 3.5e-36 156.0 211 51.7
RcHm_v2.0_Chr4g0405921 Rosa chinensis HOM05D007215 ORTHO05D009019 3.5e-36 156.0 213 48.4
Potri.019G112300 Populus trichocarpa HOM05D007215 ORTHO05D009019 6.0e-36 155.2 217 46.5
Prupe.1G207500 Prunus persica HOM05D007215 ORTHO05D009019 6.0e-36 155.2 224 49.1
Haze_01356 Corylus avellana HOM05D007215 ORTHO05D009019 1.0e-35 154.5 140 60.7
FvH4_4g10370 Fragaria vesca HOM05D007215 ORTHO05D009019 1.0e-35 154.5 211 48.8
Cc03_g14170 Coffea canephora HOM05D007215 ORTHO05D009019 3.0e-35 152.9 194 50.0
THA.LOC104816280 Tarenaya hassleriana HOM05D007215 ORTHO05D009019 6.6e-35 151.8 195 51.3
MSTRG.4303 Avicennia marina HOM05D007215 ORTHO05D009019 2.5e-34 149.8 194 49.0
Lalb_Chr09g0328091 Lupinus albus HOM05D007215 ORTHO05D009019 9.5e-34 147.9 205 48.3
Manes.11G128800 Manihot esculenta HOM05D007215 ORTHO05D009019 2.1e-33 146.7 174 52.3
CSS0011584 Camellia sinensis var. sinensis HOM05D007215 ORTHO05D009019 6.2e-33 145.2 170 54.1
Dinv33208 Davidia involucrata HOM05D007215 ORTHO05D009019 1.8e-32 143.7 192 50.0
Peaxi162Scf00483g00061 Petunia axillaris HOM05D007215 ORTHO05D009019 1.8e-32 143.7 190 49.5
SGA_v2.0_scaffold12G06193 Striga asiatica HOM05D007215 ORTHO05D009019 1.8e-32 143.7 189 50.3
Ah.07g202820 Amaranthus hybridus HOM05D007215 ORTHO05D009019 2.4e-32 143.3 180 49.4
Lj6P222T10 Lonicera japonica HOM05D007215 ORTHO05D009019 3.1e-32 142.9 171 50.3
Sabra19G0108300 Salix brachista HOM05D007215 ORTHO05D009019 4.0e-32 142.5 205 47.3
Oeu015716.1 Olea europaea HOM05D007215 ORTHO05D009019 6.8e-32 141.7 172 51.2
DCAR_027521 Daucus carota HOM05D007215 ORTHO05D009019 8.9e-32 141.4 173 49.7
MD04G1049300 Malus domestica HOM05D007215 ORTHO05D009019 8.9e-32 141.4 256 43.8
Lju470C16T0 Lonicera japonica HOM05D007215 ORTHO05D009019 3.4e-31 139.4 133 61.7
FAN22G1962 Fragaria x ananassa HOM05D007215 ORTHO05D009019 5.8e-31 138.7 178 51.7
Hma1.2p1_0150F.1_g066880 Hydrangea macrophylla HOM05D007215 ORTHO05D009019 7.6e-31 138.3 169 50.9
Cpa.g.sc9.370 Carica papaya HOM05D007215 ORTHO05D009019 4.9e-30 135.6 150 55.3
Aqoxy2G03930 Aquilegia oxysepala HOM05D007215 ORTHO05D009019 1.9e-29 133.7 133 53.4
CiPaw.02G100200 Carya illinoinensis HOM05D007215 ORTHO05D009019 5.4e-29 132.1 204 45.6
Peaxi162Scf00180g00003 Petunia axillaris HOM05D007215 ORTHO05D009019 9.2e-29 131.3 174 50.0
TAR362G0943 Trochodendron aralioides HOM05D007215 ORTHO05D009019 1.2e-28 131.0 192 50.0
Migut.G01175 Erythranthe guttata HOM05D007215 ORTHO05D009019 2.1e-28 130.2 209 45.0
Lj4g0027849 Lotus japonicus HOM05D007215 ORTHO05D009019 2.1e-28 130.2 211 44.5
arahy.Tifrunner.gnm1.ann1.9WZ3F5 Arachis hypogaea HOM05D007215 ORTHO05D009019 2.7e-28 129.8 216 44.9
CiPaw.01G170200 Carya illinoinensis HOM05D007215 ORTHO05D009019 2.7e-28 129.8 219 44.3
Oeu016616.1 Olea europaea HOM05D007215 ORTHO05D009019 2.7e-28 129.8 180 47.8
Oeu016617.1 Olea europaea HOM05D007215 ORTHO05D009019 2.7e-28 129.8 180 47.8
Duzib151G0080 Durio zibethinus HOM05D007215 ORTHO05D009019 6.0e-28 128.6 132 56.8
Ciclev10022275m.g Citrus clementina HOM05D007215 ORTHO05D009019 7.8e-28 128.3 211 43.1
Duzib268G1282 Durio zibethinus HOM05D007215 ORTHO05D009019 3.0e-27 126.3 206 42.2
Nn1g09545 Nelumbo nucifera HOM05D007215 ORTHO05D009019 3.0e-27 126.3 192 46.4
Nn7g37543 Nelumbo nucifera HOM05D007215 ORTHO05D009019 2.5e-26 123.2 194 44.8
ATR0743G235 Amborella trichopoda HOM05D007215 ORTHO05D009019 3.3e-26 122.9 140 52.1
TWI38G1882 Tripterygium wilfordii HOM05D007215 ORTHO05D009019 5.6e-26 122.1 209 42.1
MBI11_g16037_MAGBIO Magnolia biondii HOM05D007215 ORTHO05D009019 7.3e-26 121.7 194 45.4
COL.COLO4_00135 Corchorus olitorius HOM05D007215 ORTHO05D009019 1.3e-25 120.9 132 56.1
Thecc.04G165300 Theobroma cacao HOM05D007215 ORTHO05D009019 6.2e-25 118.6 210 41.4
CDE09G0824 Ceratophyllum demersum HOM05D007215 ORTHO05D009019 8.1e-25 118.2 192 42.2
AUR62002398 Chenopodium quinoa HOM05D007215 ORTHO05D009019 1.4e-24 117.5 176 46.6
Solyc06g053440.3 Solanum lycopersicum HOM05D007215 ORTHO05D009019 1.4e-24 117.5 202 43.6
AUR62023787 Chenopodium quinoa HOM05D007215 ORTHO05D009019 5.3e-24 115.5 177 47.5
HanXRQChr10g0285991 Helianthus annuus HOM05D007215 ORTHO05D009019 2.0e-23 113.6 199 41.7
SalBow6G6024 Salvia bowleyana HOM05D007215 ORTHO05D009019 2.0e-23 113.6 196 43.9
CAN.G136.10 Capsicum annuum HOM05D007215 ORTHO05D009019 7.6e-23 111.7 200 43.5
HPP92_023723 Vanilla planifolia HOM05D007215 ORTHO05D009019 1.7e-22 110.5 155 47.7
TAR633G2258 Trochodendron aralioides HOM05D007215 ORTHO05D009019 3.8e-22 109.4 183 46.4
CDE02G0746 Ceratophyllum demersum HOM05D007215 ORTHO05D009019 3.2e-21 106.3 188 42.0
Lsat_1_v5_gn_5_190641 Lactuca sativa HOM05D007215 ORTHO05D009019 3.2e-21 106.3 189 42.3
CsaV3_6G007050 Cucumis sativus L. HOM05D007215 ORTHO05D009019 9.3e-21 104.8 207 38.2
PSO017G6467 Papaver somniferum HOM05D007215 ORTHO05D009019 3.5e-20 102.8 231 39.4
PGR042G0468 Punica granatum HOM05D007215 ORTHO05D009019 3.5e-20 102.8 216 40.7
PGSC0003DMG402016333 Solanum tuberosum HOM05D007215 ORTHO05D009019 3.5e-20 102.8 171 43.9
Oeu021574.1 Olea europaea HOM05D007215 ORTHO05D009019 6.0e-20 102.1 182 42.9
Rhsim09G0009600 Rhododendron simsii HOM05D007215 ORTHO05D009019 1.0e-19 101.3 180 42.8
Eucgr.L00006 Eucalyptus grandis HOM05D007215 ORTHO05D009019 2.3e-19 100.1 197 42.1
Sopen06g018520 Solanum pennellii HOM05D007215 ORTHO05D009019 2.5e-18 96.7 178 42.1
CANSAT56G1068 Cannabis sativa HOM05D007215 ORTHO05D009019 3.3e-18 96.3 273 34.8
TAR633G0862 Trochodendron aralioides HOM05D007215 ORTHO05D009019 7.3e-18 95.1 169 45.6
MD17G1178000 Malus domestica HOM05D007215 ORTHO05D009019 9.6e-18 94.7 114 51.8
ECA238G1604 Erigeron canadensis HOM05D007215 ORTHO05D009019 4.8e-17 92.4 177 42.9
PSO837G0056 Papaver somniferum HOM05D007215 ORTHO05D009019 1.1e-16 91.3 228 37.7
MELO3C022424.2 Cucumis melo HOM05D007215 ORTHO05D009019 1.8e-16 90.5 186 37.6
GSVIVG01038146001 Vitis vinifera HOM05D007215 ORTHO05D009019 2.4e-16 90.1 119 47.1
HPP92_007596 Vanilla planifolia HOM05D007215 ORTHO05D009019 3.4e-15 86.3 128 45.3
Migut.I00402 Erythranthe guttata HOM05D007215 ORTHO05D009019 9.9e-15 84.7 115 50.4
Lj6P211T14 Lonicera japonica HOM05D007215 ORTHO05D009019 1.9e-13 80.5 127 43.3
Os01g0393300 Oryza sativa ssp. japonica HOM05D007215 ORTHO05D009019 3.9e-11 72.8 210 35.7
Gohir.D10G122900 Gossypium hirsutum HOM05D007215 ORTHO05D009019 3.7e-09 66.2 130 36.9


User provided reference genes

Program Settings