Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 1.4e-160 569.7 327 100.0
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 2.0e-154 549.3 327 96.6
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 3.1e-147 525.4 324 92.3
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 9.1e-147 523.9 327 92.7
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 7.5e-141 504.2 324 88.9
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 2.2e-140 502.7 324 90.1
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 2.0e-130 469.5 319 85.3
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 1.4e-126 456.8 320 82.5
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 2.2e-124 449.5 298 89.6
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 2.8e-124 449.1 324 83.3
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 2.8e-124 449.1 324 83.3
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 1.8e-123 446.4 322 82.6
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 9.2e-123 444.1 324 81.8
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 4.9e-100 368.6 326 66.6
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 4.9e-100 368.6 326 69.6
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 1.1e-99 367.5 324 68.8
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 3.2e-99 365.9 320 68.8
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 1.2e-98 364.0 322 69.6
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 1.2e-98 364.0 321 68.2
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 1.6e-98 363.6 326 66.9
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 1.6e-98 363.6 321 69.2
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 2.1e-98 363.2 329 65.0
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 6.0e-98 361.7 316 63.6
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 1.7e-97 360.1 324 65.4
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 2.3e-97 359.8 324 67.0
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 6.6e-97 358.2 322 67.7
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 1.5e-96 357.1 321 68.8
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 1.9e-96 356.7 325 66.2
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 1.9e-96 356.7 320 67.2
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 3.3e-96 355.9 323 68.4
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 7.3e-96 354.8 320 65.9
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 7.3e-96 354.8 323 68.4
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 9.6e-96 354.4 319 61.8
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 9.6e-96 354.4 324 65.7
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.6e-95 353.6 323 68.4
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 1.1e-94 350.9 320 64.1
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 5.2e-94 348.6 335 63.0
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 2.0e-93 346.7 320 67.2
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 4.4e-93 345.5 318 67.3
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 7.6e-93 344.7 325 64.0
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 1.3e-92 344.0 323 63.8
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 1.1e-91 340.9 320 66.2
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 1.9e-91 340.1 327 64.5
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 1.9e-91 340.1 320 66.9
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 1.9e-91 340.1 333 62.8
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 1.2e-90 337.4 325 63.7
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 2.7e-90 336.3 325 65.8
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 2.3e-89 333.2 357 54.9
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 1.1e-88 330.9 321 62.3
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.1e-88 330.9 320 64.1
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 1.9e-88 330.1 321 59.8
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 2.5e-88 329.7 321 63.9
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 4.3e-88 328.9 323 66.6
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 4.3e-88 328.9 320 64.4
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 5.6e-88 328.6 323 64.7
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 5.6e-88 328.6 322 64.3
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 7.3e-88 328.2 322 64.6
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 2.1e-87 326.6 322 63.4
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 2.8e-87 326.2 322 64.0
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 1.8e-86 323.6 322 61.5
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 2.4e-86 323.2 322 63.0
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 3.1e-86 322.8 347 55.3
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 6.9e-86 321.6 317 64.0
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 1.5e-85 320.5 316 63.9
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 3.4e-85 319.3 320 65.0
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 7.6e-85 318.2 319 64.3
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 7.6e-85 318.2 330 56.4
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 1.3e-84 317.4 325 60.9
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 1.1e-83 314.3 312 62.5
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 4.2e-83 312.4 320 63.1
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 5.4e-83 312.0 347 53.9
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 5.4e-83 312.0 321 62.3
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 2.1e-82 310.1 323 59.1
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 2.7e-82 309.7 328 57.9
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 4.6e-82 308.9 317 61.2
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 6.0e-82 308.5 320 60.9
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 3.0e-81 306.2 320 60.0
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 2.5e-80 303.1 323 60.4
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 2.5e-80 303.1 323 60.4
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 5.6e-80 302.0 325 58.8
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 9.6e-80 301.2 329 54.4
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 2.1e-79 300.1 317 61.5
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 3.6e-79 299.3 340 47.6
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 6.2e-79 298.5 169 84.6
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 8.1e-79 298.1 316 61.4
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 6.9e-78 295.0 316 59.8
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 7.6e-77 291.6 333 57.4
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 1.3e-76 290.8 322 58.4
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 9.3e-75 284.6 319 59.2
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 2.1e-74 283.5 322 50.9
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 2.1e-74 283.5 319 59.2
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 1.5e-72 277.3 319 57.7
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 4.8e-71 272.3 321 56.7
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 5.8e-69 265.4 321 54.8
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 7.6e-69 265.0 202 64.9
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 1.3e-65 254.2 317 55.5
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 2.0e-61 240.4 283 57.6
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 2.6e-61 240.0 324 54.6
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 3.4e-61 239.6 318 52.5
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.7e-60 237.3 326 42.0
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 3.5e-58 229.6 175 61.7
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 9.7e-56 221.5 169 60.4
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 3.1e-54 216.5 208 52.4
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 6.9e-54 215.3 168 59.5
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 1.3e-52 211.1 256 44.5
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 1.7e-52 210.7 171 55.6
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.2e-52 210.3 208 51.4
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.9e-52 209.9 168 58.9
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 4.3e-48 196.1 198 48.0
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 1.3e-47 194.5 165 54.5
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.3e-47 194.5 170 55.3
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 3.8e-44 183.0 170 50.0
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.2e-42 177.9 187 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.0e-36 158.3 214 59.3
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 6.3e-31 139.0 101 64.4
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 1.8e-30 137.5 336 38.7
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.7e-26 123.6 97 60.8
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 6.1e-26 122.5 249 31.3
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.8e-25 120.9 170 40.0
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 4.4e-24 116.3 75 70.7
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 2.8e-23 113.6 69 79.7
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 6.3e-23 112.5 72 69.4
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 5.4e-22 109.4 62 85.5
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 3.5e-21 106.7 347 39.5
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.2e-19 100.1 362 27.9
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 3.0e-17 93.6 88 52.3
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 7.7e-13 79.0 50 68.0
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 2.8e-10 70.5 181 26.0
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 4.7e-10 69.7 54 63.0
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 6.8e-09 65.9 126 34.9
PSO063G4587 Papaver somniferum HOM05D005795 ORTHO05D007200 5.7e-08 62.8 111 34.2
SGA_v2.0_scaffold44G16633 Striga asiatica HOM05D056423 ORTHO05D406573 2.9e-07 60.5 143 29.4
Rhsim12G0155600 Rhododendron simsii HOM05D005795 ORTHO05D007200 2.4e-06 57.4 36 72.2


User provided reference genes

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