Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 6.1e-156 554.3 315 100.0
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 8.8e-147 523.9 315 94.0
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.4e-144 516.5 315 94.6
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 7.7e-143 510.8 320 90.9
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 2.2e-137 492.7 321 88.2
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 2.2e-137 492.7 321 88.2
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 2.2e-137 492.7 320 89.1
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 4.8e-137 491.5 320 87.2
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 6.3e-137 491.1 311 90.7
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 3.5e-135 485.3 320 86.9
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 5.9e-135 484.6 321 86.6
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 3.2e-133 478.8 321 85.7
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 4.0e-131 471.9 321 86.3
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 4.8e-129 464.9 303 87.8
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 1.8e-123 446.4 294 87.8
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 3.0e-123 445.7 320 80.9
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 2.8e-121 439.1 305 84.9
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 3.1e-120 435.6 294 87.1
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 1.2e-119 433.7 303 79.2
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 5.9e-119 431.4 310 81.9
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.9e-118 429.1 313 72.2
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 5.5e-117 424.9 307 72.0
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 9.5e-117 424.1 307 72.0
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 1.6e-116 423.3 312 77.9
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.4e-115 420.2 307 71.7
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.8e-115 419.9 302 76.8
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.3e-115 419.5 303 73.6
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 2.3e-115 419.5 312 76.3
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 8.8e-115 417.5 305 72.8
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 1.2e-114 417.2 303 73.6
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 1.2e-114 417.2 303 73.6
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.0e-114 416.4 305 73.1
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 2.6e-114 416.0 298 72.5
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 4.4e-114 415.2 314 76.1
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 2.2e-113 412.9 300 78.3
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 2.8e-113 412.5 311 70.7
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 4.9e-113 411.8 302 76.5
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 2.4e-112 409.5 311 71.4
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 5.4e-112 408.3 303 76.2
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 5.4e-112 408.3 312 69.9
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 7.0e-112 407.9 316 73.7
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 7.0e-112 407.9 314 68.5
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.2e-111 407.1 298 71.5
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.6e-111 406.8 304 69.4
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 2.0e-111 406.4 310 71.6
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.7e-111 406.0 301 71.1
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 3.5e-111 405.6 308 73.4
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 4.5e-111 405.2 303 78.9
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 5.9e-111 404.8 300 71.0
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 7.8e-111 404.4 318 67.6
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.3e-110 403.7 291 80.4
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.3e-110 402.9 309 71.5
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 2.9e-110 402.5 311 68.2
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 3.8e-110 402.1 310 69.7
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 5.0e-110 401.7 311 69.1
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.0e-110 401.7 301 70.4
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 6.6e-110 401.4 301 70.1
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 6.6e-110 401.4 310 68.4
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 8.6e-110 401.0 307 70.0
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.5e-109 400.2 310 72.6
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.9e-109 399.8 304 75.3
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 1.9e-109 399.8 304 70.1
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.9e-109 399.8 303 71.0
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 3.3e-109 399.1 299 70.6
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 4.3e-109 398.7 299 70.6
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 5.6e-109 398.3 318 65.4
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 7.3e-109 397.9 314 68.5
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 9.5e-109 397.5 307 75.9
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.2e-108 397.1 313 68.4
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 1.6e-108 396.7 299 70.6
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 1.6e-108 396.7 307 73.6
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.1e-108 396.4 309 70.2
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 3.6e-108 395.6 307 68.4
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.6e-108 395.6 304 76.0
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 8.0e-108 394.4 308 73.7
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.0e-107 394.0 314 70.4
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.4e-107 393.7 308 69.2
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.4e-107 393.7 307 75.9
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.8e-107 393.3 308 73.7
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 1.8e-107 393.3 302 69.5
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 2.3e-107 392.9 291 72.2
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 2.3e-107 392.9 303 67.7
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 4.0e-107 392.1 304 68.8
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 5.2e-107 391.7 307 75.2
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 8.9e-107 391.0 296 78.0
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 8.9e-107 391.0 302 73.2
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 3.4e-106 389.0 310 72.3
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.4e-106 388.7 314 74.2
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.7e-105 386.7 314 74.2
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 3.7e-105 385.6 307 70.4
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.2e-103 380.6 314 69.4
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.7e-103 379.4 298 68.1
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 3.5e-103 379.0 311 65.9
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 4.6e-103 378.6 298 72.5
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 4.6e-103 378.6 326 66.9
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 4.6e-103 378.6 298 76.5
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 2.3e-102 376.3 308 69.5
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 3.0e-102 375.9 304 67.8
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.1e-101 374.0 300 66.0
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.5e-101 373.6 303 67.3
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 4.3e-101 372.1 308 67.9
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 4.3e-101 372.1 300 72.3
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 5.6e-101 371.7 300 69.3
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 4.7e-100 368.6 300 68.3
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.1e-99 367.5 327 62.1
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 2.3e-99 366.3 291 67.0
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 5.2e-99 365.2 312 62.5
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.3e-97 360.5 310 64.2
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 3.7e-97 359.0 306 65.7
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 5.4e-96 355.1 312 68.9
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.6e-92 342.4 298 63.4
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 8.9e-91 337.8 299 62.2
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 2.3e-86 323.2 244 67.6
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 3.3e-85 319.3 313 58.5
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.4e-83 313.9 218 86.2
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 7.6e-82 308.1 240 67.9
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.1e-79 300.1 317 55.8
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.6e-79 298.9 307 59.3
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 4.6e-79 298.9 315 55.9
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 5.6e-77 292.0 218 72.9
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 5.3e-67 258.8 299 59.2
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.5e-66 257.3 299 58.5
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.2e-63 247.7 308 56.8
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 5.6e-61 238.8 220 63.2
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 2.1e-60 236.9 239 62.3
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 4.0e-59 232.6 289 53.6
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 3.4e-58 229.6 296 55.1
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 2.4e-51 206.8 316 45.6
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 9.3e-48 194.9 198 55.1
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.5e-47 193.0 272 48.2
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.1e-40 171.4 293 37.9
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 4.2e-40 169.5 320 38.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 9.4e-40 168.3 299 43.1
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 6.3e-36 155.6 129 66.7
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.1e-35 154.8 128 61.7
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 3.4e-34 149.8 173 55.5
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 3.4e-34 149.8 173 55.5
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 3.4e-34 149.8 173 55.5
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.0e-33 148.3 126 60.3
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.6e-31 139.8 95 74.7
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.1e-29 134.8 216 38.4
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.1e-29 134.8 72 95.8
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.4e-27 127.1 86 73.3
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 1.7e-25 120.9 133 48.9
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 2.5e-24 117.1 80 76.2
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 8.0e-23 112.1 166 42.8
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 2.0e-21 107.5 221 35.7
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 5.7e-21 105.9 94 58.5
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.8e-20 102.8 175 45.1
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 7.7e-18 95.5 65 76.9
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 9.4e-16 88.6 82 59.8
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 3.6e-15 86.7 71 63.4
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 3.0e-14 83.6 78 52.6
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 5.2e-14 82.8 71 60.6
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 3.1e-11 73.6 112 41.1
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.2e-07 61.6 40 72.5
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.0e-06 58.5 59 57.6
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.4e-06 58.2 95 38.9
AT3G43260 Arabidopsis thaliana HOM05D046300 ORTHO05D038666 5.2e-06 56.2 55 47.3


User provided reference genes

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