Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 3.4e-149 531.6 258 100.0
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 3.1e-134 481.9 257 90.7
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.4e-129 466.5 259 87.3
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 2.6e-128 462.2 259 85.3
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.1e-126 456.8 255 88.6
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 7.0e-126 454.1 258 85.3
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 7.2e-123 444.1 263 82.1
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.6e-120 435.6 259 82.6
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 2.2e-119 432.6 262 80.2
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.6e-117 426.4 258 79.8
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 7.7e-117 424.1 281 74.0
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 2.9e-116 422.2 258 79.5
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 5.5e-115 417.9 300 70.3
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 9.2e-110 400.6 256 75.8
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.3e-108 396.7 258 75.2
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 1.3e-108 396.7 257 74.7
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 4.7e-98 361.7 302 63.9
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 6.8e-97 357.8 225 76.9
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 4.1e-94 348.6 257 64.6
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.2e-93 347.1 257 64.2
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 2.1e-93 346.3 257 63.0
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 3.5e-93 345.5 257 63.0
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.6e-93 345.1 258 64.0
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.3e-92 343.6 257 63.8
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.7e-92 343.2 257 63.8
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 3.3e-91 339.0 257 62.3
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.6e-90 336.7 258 64.3
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.6e-90 336.7 257 63.8
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.6e-90 335.5 258 61.2
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.1e-89 334.0 258 64.3
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 3.1e-89 332.4 258 61.6
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 4.0e-89 332.0 258 62.4
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 4.0e-89 332.0 259 62.5
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 4.0e-89 332.0 258 61.6
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 5.2e-89 331.6 258 61.2
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 8.9e-89 330.9 260 62.3
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 2.0e-88 329.7 259 61.8
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.0e-88 329.7 258 62.4
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.4e-88 328.6 258 62.4
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.4e-88 328.6 258 60.9
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 5.8e-88 328.2 258 60.9
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 7.6e-88 327.8 258 60.9
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 9.9e-88 327.4 263 61.2
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 6.4e-87 324.7 258 58.9
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.4e-86 323.6 258 61.6
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.4e-86 323.6 258 61.6
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 7.1e-86 321.2 260 60.0
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.2e-85 320.5 257 59.5
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 3.5e-85 318.9 261 60.9
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.7e-84 316.6 259 57.1
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 5.1e-84 315.1 241 62.7
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 8.6e-84 314.3 262 57.3
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.5e-83 312.8 238 62.2
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 5.6e-83 311.6 257 58.4
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 1.6e-82 310.1 246 65.9
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 2.8e-82 309.3 257 57.6
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 2.8e-82 309.3 258 56.2
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 3.6e-82 308.9 298 53.4
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 3.6e-82 308.9 257 56.8
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 4.7e-82 308.5 258 56.6
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 6.2e-82 308.1 256 58.6
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.1e-82 307.8 271 55.4
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.1e-81 307.4 221 65.2
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-81 306.6 260 58.1
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 3.1e-81 305.8 257 56.4
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 4.0e-81 305.4 257 57.6
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 5.2e-81 305.1 257 58.4
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 6.8e-81 304.7 238 61.3
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.2e-80 303.9 257 58.8
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 1.2e-80 303.9 260 57.3
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.2e-80 303.9 260 57.3
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 1.5e-80 303.5 263 58.9
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 5.8e-80 301.6 221 63.3
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.2e-79 299.7 290 54.8
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 2.9e-79 299.3 260 57.3
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.9e-79 298.5 251 58.6
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.9e-79 298.5 253 58.1
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 8.4e-79 297.7 279 53.0
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.1e-78 297.4 259 56.0
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 3.2e-78 295.8 257 55.6
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 2.1e-77 293.1 217 63.1
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.7e-77 292.7 207 65.2
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.7e-77 292.7 207 65.2
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 4.6e-77 292.0 260 58.1
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 6.0e-77 291.6 257 52.1
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 4.3e-75 285.4 142 93.0
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 7.3e-75 284.6 233 60.9
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 9.6e-75 284.3 221 57.9
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.1e-74 283.1 235 57.9
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.4e-73 279.6 237 55.7
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.4e-73 279.6 325 46.8
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 5.3e-73 278.5 183 73.8
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 6.9e-73 278.1 259 53.7
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 7.6e-72 274.6 237 54.4
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 3.8e-71 272.3 271 50.9
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 6.4e-71 271.6 278 48.6
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 1.9e-70 270.0 265 50.2
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.3e-68 263.8 239 53.6
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 1.3e-68 263.8 220 61.8
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.7e-68 263.5 200 61.5
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.1e-68 261.9 213 57.7
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 1.5e-67 260.4 262 49.2
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 1.1e-65 254.2 226 56.6
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.0e-65 252.3 200 61.0
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 4.5e-64 248.8 207 55.6
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 4.6e-61 238.8 182 60.4
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 4.6e-61 238.8 181 61.9
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.8e-57 226.9 186 57.0
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 3.1e-57 226.1 267 47.2
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 8.4e-55 218.0 263 45.2
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.4e-54 217.2 235 48.9
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.6e-53 212.2 185 56.2
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.5e-51 207.2 195 52.8
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.3e-50 204.1 126 77.8
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.8e-49 200.3 171 59.6
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 9.0e-49 198.0 171 55.0
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 5.9e-48 195.3 217 43.3
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.7e-47 193.7 191 47.1
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.2e-45 187.6 186 47.8
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 6.1e-45 185.3 151 57.0
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 7.9e-45 184.9 143 58.0
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.0e-44 183.0 223 43.0
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 8.7e-44 181.4 167 55.1
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 4.8e-42 175.6 207 43.5
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.4e-41 173.3 149 56.4
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.2e-40 171.0 130 65.4
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 8.5e-39 164.9 130 58.5
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 1.5e-35 154.1 215 39.1
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 5.9e-32 142.1 352 28.1
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 5.9e-32 142.1 200 40.0
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 1.7e-31 140.6 110 62.7
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.9e-30 137.1 113 56.6
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.5e-30 136.7 129 54.3
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.2e-30 136.3 129 54.3
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.2e-30 136.0 88 70.5
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.4e-30 134.8 129 52.7
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.0e-28 131.3 223 32.3
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 6.3e-26 122.1 149 46.3
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-25 121.3 239 33.5
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 5.3e-25 119.0 256 29.3
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.3e-23 114.4 97 55.7
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 4.7e-21 105.9 96 53.1
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 1.5e-19 100.9 61 72.1
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.4e-19 99.4 81 54.3
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.7e-19 99.0 66 62.1
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.5e-19 98.6 66 57.6
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.7e-18 96.3 68 67.6
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 4.8e-18 95.9 76 63.2
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.8e-18 95.9 66 59.1
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 7.0e-17 92.0 71 63.4
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.5e-14 84.3 74 54.1
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 8.0e-13 78.6 90 48.9
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 5.2e-12 75.9 83 47.0
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 3.4e-11 73.2 82 50.0
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 3.7e-10 69.7 59 50.8
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 9.1e-09 65.1 43 65.1
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 2.7e-08 63.5 88 43.2
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 5.9e-08 62.4 76 40.8
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 2.5e-06 57.0 65 49.2
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 9.4e-06 55.1 147 27.9


User provided reference genes

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