Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 0.0e+00 1427.5 785 100.0
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 0.0e+00 1268.4 788 89.8
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 0.0e+00 1158.3 784 81.4
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 6.4e-311 1070.5 791 76.0
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.0e-301 1038.9 770 75.8
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.7e-293 1010.4 781 72.2
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 4.6e-253 878.2 817 65.1
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.7e-252 876.3 817 65.0
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 2.1e-250 869.4 817 64.7
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.9e-246 856.3 818 64.3
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 6.8e-241 837.8 842 62.7
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.9e-230 803.1 791 63.5
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 6.2e-210 734.9 790 57.8
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 9.1e-177 624.8 693 58.9
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.3e-172 610.1 753 52.9
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 2.0e-171 607.1 784 51.3
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 7.0e-145 518.8 769 46.2
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.0e-127 461.8 789 40.6
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.1e-124 451.8 703 41.8
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 2.0e-123 447.6 665 42.6
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 9.9e-123 445.3 674 42.9
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.3e-122 444.9 674 42.9
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.2e-122 444.1 679 43.2
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 2.1e-117 427.6 727 41.1
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.1e-117 427.6 682 40.9
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.4e-115 420.2 679 42.4
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 9.9e-115 418.7 682 40.9
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 5.4e-113 412.9 674 42.3
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 3.5e-112 410.2 757 37.8
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 5.1e-111 406.4 806 38.0
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.1e-110 405.2 604 45.2
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.1e-110 405.2 721 40.9
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.5e-110 404.8 671 42.3
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 4.3e-110 403.3 702 40.3
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 3.4e-107 393.7 717 40.7
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.4e-107 393.7 651 40.7
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 7.6e-107 392.5 669 40.8
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.7e-106 391.3 767 36.8
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.2e-106 391.0 648 40.1
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 2.2e-106 391.0 707 39.5
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.9e-106 390.6 679 38.9
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 4.6e-104 383.3 727 38.8
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 7.9e-104 382.5 823 36.0
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.8e-103 381.3 679 39.5
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 3.9e-103 380.2 727 36.7
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 3.9e-103 380.2 718 38.9
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.3e-101 375.2 678 38.1
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 2.1e-101 374.4 632 39.6
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 4.8e-101 373.2 683 40.7
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 8.1e-101 372.5 701 39.1
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.1e-100 372.1 807 39.7
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 5.3e-100 369.8 748 37.0
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 5.3e-100 369.8 683 40.3
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 9.0e-100 369.0 706 39.0
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.5e-99 368.2 661 37.2
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 7.6e-99 365.9 825 36.4
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 7.6e-99 365.9 739 36.1
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.2e-98 364.4 665 38.5
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 3.8e-98 363.6 730 38.5
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.4e-97 360.9 676 40.4
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 2.4e-97 360.9 658 41.3
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 3.5e-96 357.1 717 37.2
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 4.6e-96 356.7 746 37.3
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.3e-95 355.1 809 36.7
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.1e-94 352.1 672 37.9
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.5e-94 351.7 671 36.8
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.3e-94 350.5 733 36.8
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.7e-93 347.1 776 35.2
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 3.7e-93 347.1 705 36.9
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.1e-92 345.5 755 36.4
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 2.4e-92 344.4 683 38.7
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 6.9e-92 342.8 727 35.5
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 1.0e-90 339.0 663 37.4
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.9e-90 337.4 663 38.2
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 2.9e-90 337.4 772 34.2
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.0e-87 328.9 675 37.0
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.9e-86 324.7 681 36.7
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.3e-85 322.0 651 35.0
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 3.7e-85 320.5 781 33.4
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.1e-84 318.9 669 37.4
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.8e-84 318.2 702 36.2
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 4.5e-83 313.5 684 33.5
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 5.9e-83 313.2 732 34.3
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 6.5e-82 309.7 740 33.2
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 6.5e-82 309.7 705 35.2
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.4e-81 308.5 664 36.6
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.4e-81 308.5 655 36.3
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 5.1e-79 300.1 655 34.5
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 6.3e-77 293.1 843 31.8
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.2e-75 288.9 718 32.9
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.2e-75 288.9 725 34.2
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 2.2e-74 284.6 713 33.4
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.4e-73 282.0 702 32.1
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 4.2e-73 280.4 229 72.5
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.2e-72 278.9 689 34.3
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 2.6e-70 271.2 678 31.7
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 4.4e-70 270.4 827 32.4
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 4.8e-69 266.9 906 30.8
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.4e-68 265.4 769 30.2
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.7e-66 258.5 690 32.0
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.1e-65 255.8 714 30.0
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 2.5e-65 254.6 638 37.3
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.1e-64 251.5 594 33.8
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 6.7e-63 246.5 864 30.7
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.5e-62 245.4 717 32.8
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 5.7e-62 243.4 763 31.3
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.8e-60 238.4 818 30.2
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.8e-60 238.4 678 33.0
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 2.0e-59 235.0 692 30.1
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 2.7e-56 224.6 672 32.0
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 4.7e-56 223.8 934 27.2
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 4.0e-55 220.7 966 29.1
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.5e-54 218.8 311 43.4
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 3.1e-52 211.1 271 46.5
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.7e-48 198.0 277 43.7
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 3.6e-48 197.6 632 31.0
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 8.0e-48 196.4 430 34.4
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.7e-45 188.7 646 26.0
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 8.3e-45 186.4 671 27.9
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.3e-41 174.5 663 26.8
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.3e-39 168.3 274 39.8
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.8e-36 158.7 163 58.9
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 3.1e-36 157.9 205 42.9
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 2.8e-32 144.8 133 52.6
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 3.7e-29 134.4 370 32.7
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 3.5e-27 127.9 133 55.6
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.5e-25 122.5 150 42.0
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.2e-24 119.4 779 25.4
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 8.9e-23 113.2 380 31.3
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 5.8e-22 110.5 154 44.8
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 2.1e-16 92.0 495 26.9
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 3.6e-16 91.3 377 29.4
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 6.2e-16 90.5 207 32.4
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 8.9e-15 86.7 448 28.3
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 2.6e-14 85.1 169 34.9
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 7.5e-14 83.6 200 31.5
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 7.1e-12 77.0 76 52.6
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.4e-07 62.8 123 30.9


User provided reference genes

Program Settings