Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 5.7e-167 590.9 309 100.0
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 4.7e-153 544.7 309 93.2
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 4.0e-144 515.0 314 88.5
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 7.1e-141 504.2 313 85.3
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.2e-140 503.4 313 85.3
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 3.1e-136 488.8 310 83.9
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 3.1e-136 488.8 310 83.9
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 8.9e-136 487.3 309 84.5
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.2e-135 486.9 314 83.4
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.5e-135 486.5 310 83.5
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 3.4e-135 485.3 310 83.2
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 9.9e-135 483.8 310 83.2
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.8e-120 436.4 311 76.5
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.3e-115 420.2 309 74.1
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.9e-115 418.7 313 73.2
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.9e-115 418.7 317 73.5
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 8.7e-115 417.5 313 73.5
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.5e-114 416.0 312 72.8
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.6e-113 413.3 304 73.7
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 6.2e-113 411.4 309 73.5
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 2.6e-111 406.0 309 71.5
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.7e-110 403.3 305 70.5
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 4.2e-109 398.7 307 69.7
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-108 397.1 309 70.2
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.2e-108 397.1 305 70.2
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.2e-108 397.1 309 70.2
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.5e-106 390.2 298 70.1
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.9e-101 373.2 291 65.3
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 7.1e-101 371.3 314 62.7
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 9.3e-101 370.9 314 62.7
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.2e-100 370.5 313 62.6
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 8.7e-99 364.4 310 63.2
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 8.7e-99 364.4 310 63.2
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.1e-98 364.0 310 62.9
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.9e-98 363.2 281 63.7
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.5e-98 362.8 298 62.8
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 7.4e-98 361.3 258 67.1
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.3e-97 360.5 257 66.9
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.8e-97 359.4 275 65.8
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 4.8e-97 358.6 298 62.1
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.1e-96 357.5 295 60.0
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.4e-96 357.1 302 61.3
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.8e-96 356.7 312 61.5
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.8e-96 356.7 299 60.5
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 4.1e-96 355.5 314 61.8
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 5.3e-96 355.1 317 60.6
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 6.9e-96 354.8 274 64.6
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 9.0e-96 354.4 291 61.2
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.2e-95 354.0 291 61.2
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.5e-95 353.6 295 62.0
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.5e-95 353.6 295 61.4
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 4.5e-95 352.1 310 59.0
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 4.5e-95 352.1 309 60.8
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.8e-95 351.7 302 60.6
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 7.6e-95 351.3 310 60.6
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 7.6e-95 351.3 262 66.8
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.0e-94 350.9 244 67.6
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.7e-94 350.1 299 60.5
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 2.2e-94 349.7 261 64.4
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.2e-94 349.7 300 62.0
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 3.8e-94 349.0 294 60.2
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 5.0e-94 348.6 253 67.6
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 5.0e-94 348.6 303 61.1
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 8.4e-94 347.8 305 60.7
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.1e-93 347.4 305 60.0
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.4e-93 347.1 300 59.7
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 1.4e-93 347.1 258 65.5
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 2.5e-93 346.3 288 62.2
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 2.5e-93 346.3 284 62.0
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 4.2e-93 345.5 292 62.3
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 4.2e-93 345.5 299 60.2
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 5.5e-93 345.1 300 59.3
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.1e-92 343.2 328 57.3
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 3.5e-92 342.4 252 66.3
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.0e-91 340.9 308 59.7
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.8e-91 340.1 305 59.7
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 5.1e-91 338.6 304 60.5
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 5.1e-91 338.6 301 58.5
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 1.9e-90 336.7 270 63.7
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 2.5e-90 336.3 272 61.4
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.3e-90 335.9 251 65.3
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 9.7e-90 334.3 308 58.1
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.3e-89 334.0 284 59.9
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 2.8e-89 332.8 289 60.2
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.4e-88 329.7 248 63.7
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 2.4e-88 329.7 293 59.0
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 4.1e-88 328.9 266 62.8
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 5.3e-88 328.6 269 61.3
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 6.9e-88 328.2 247 64.8
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 6.9e-88 328.2 293 59.0
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 9.0e-88 327.8 282 61.0
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 3.4e-87 325.9 254 63.4
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.0e-86 324.3 254 63.0
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.7e-86 323.6 291 59.8
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.9e-86 322.8 232 66.4
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.4e-85 320.5 223 75.3
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.4e-85 320.5 263 62.0
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 2.5e-85 319.7 266 62.8
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 7.2e-85 318.2 294 57.5
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 9.4e-85 317.8 303 55.4
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 9.4e-85 317.8 303 55.4
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 9.4e-85 317.8 349 50.4
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.6e-84 317.0 278 56.1
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 2.7e-84 316.2 272 65.1
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 4.6e-84 315.5 268 59.7
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.1e-84 315.1 298 56.7
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 6.1e-84 315.1 220 67.3
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.1e-82 310.8 279 56.6
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.5e-82 310.5 270 60.0
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.7e-81 307.0 276 56.9
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.3e-81 305.1 273 59.7
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.4e-80 303.9 267 58.4
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.8e-80 303.5 232 60.8
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 1.8e-80 303.5 209 69.9
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 9.1e-80 301.2 318 51.3
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.5e-79 300.4 308 53.6
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 3.4e-79 299.3 260 60.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.7e-78 297.0 250 59.6
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 2.2e-78 296.6 241 60.2
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 8.5e-78 294.7 225 63.6
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 8.5e-78 294.7 241 59.8
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 5.5e-77 292.0 239 61.9
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.5e-77 292.0 277 56.3
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 4.7e-76 288.9 304 53.3
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 7.9e-76 288.1 242 58.7
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.8e-75 284.6 329 48.6
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 8.8e-75 284.6 336 46.7
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 4.4e-74 282.3 240 55.8
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.7e-74 282.0 329 48.9
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 9.1e-72 274.6 232 59.5
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 5.9e-71 271.9 301 47.8
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.5e-66 257.3 223 58.7
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.1e-64 249.6 212 59.4
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.5e-58 230.7 224 46.4
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 4.4e-58 229.2 279 40.9
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.8e-57 226.5 388 37.1
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.4e-56 223.4 177 59.9
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 7.2e-53 211.8 236 44.1
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.2e-52 211.1 205 54.1
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.0e-51 208.0 190 58.4
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.3e-51 206.8 243 47.3
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 4.0e-51 206.1 229 43.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.9e-45 187.2 131 67.9
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 8.0e-44 181.8 146 61.6
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.2e-42 177.9 187 45.5
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 1.3e-33 147.9 108 63.9
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 6.2e-28 129.0 129 51.2
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.1e-21 108.2 79 67.1
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 5.6e-21 105.9 73 74.0
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.1e-19 101.7 140 40.7
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 2.3e-14 84.0 70 54.3
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.1e-13 81.6 184 34.2
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 7.3e-13 79.0 106 44.3
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.6e-12 77.8 54 64.8
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 2.1e-12 77.4 106 43.4
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.8e-11 74.3 73 50.7
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-08 65.1 52 59.6
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 3.2e-08 63.5 210 26.2
Gohir.A05G174100 Gossypium hirsutum HOM05D002234 ORTHO05D002254 7.1e-08 62.4 206 25.7
Gohir.D05G177100 Gossypium hirsutum HOM05D002234 ORTHO05D002254 7.1e-08 62.4 206 25.7
Gorai.009G182500 Gossypium raimondii HOM05D002234 ORTHO05D002254 7.1e-08 62.4 206 25.7
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.7e-07 60.5 48 58.3
Hund23427 Selenicereus undatus HOM05D002234 ORTHO05D002254 1.0e-06 58.5 311 23.8
COL.COLO4_31843 Corchorus olitorius HOM05D002234 ORTHO05D002254 1.3e-06 58.2 249 24.9
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 1.3e-06 58.2 237 23.2
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 1.7e-06 57.8 219 26.5
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 6.6e-06 55.8 197 25.9
Duzib192G0327 Durio zibethinus HOM05D002234 ORTHO05D002254 8.7e-06 55.5 210 24.8
Duzib235G1028 Durio zibethinus HOM05D002234 ORTHO05D002254 8.7e-06 55.5 211 25.6


User provided reference genes

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