Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.2e-92 343.2 182 100.0
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.6e-74 282.3 185 85.4
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.7e-73 279.6 190 84.7
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 8.3e-73 277.3 182 79.7
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 8.3e-73 277.3 189 84.1
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.1e-72 276.9 181 79.6
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 9.1e-72 273.9 185 83.2
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 5.9e-71 271.2 164 84.1
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.9e-71 271.2 183 78.1
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 5.0e-70 268.1 179 77.1
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-69 266.5 179 77.1
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 8.0e-68 260.8 164 79.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 8.0e-68 260.8 180 81.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 4.0e-67 258.5 184 80.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 5.2e-67 258.1 180 80.6
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 4.9e-65 251.5 182 73.6
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-64 250.0 164 78.0
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.9e-62 242.3 161 78.9
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-58 230.3 180 74.4
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-58 229.6 163 74.8
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.0e-51 207.2 165 70.3
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.8e-51 204.5 205 59.0
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.3e-37 158.7 183 54.6
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.1e-36 156.4 189 54.5
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.1e-35 154.1 175 51.4
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.8e-35 153.3 182 52.7
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.3e-35 152.9 189 52.9
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 6.8e-35 151.4 185 53.5
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.2e-34 150.6 174 50.6
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-34 149.8 185 53.0
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 2.6e-34 149.4 182 50.0
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.4e-34 149.1 179 48.6
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 3.4e-34 149.1 182 50.0
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 5.8e-34 148.3 167 55.1
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 5.8e-34 148.3 185 52.4
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-33 147.1 185 53.0
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.7e-33 146.7 182 48.4
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 3.8e-33 145.6 187 47.6
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.8e-33 145.6 172 48.8
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 4.9e-33 145.2 185 51.9
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 4.9e-33 145.2 178 51.7
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 6.4e-33 144.8 176 48.9
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 8.4e-33 144.4 183 49.2
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.9e-32 143.3 187 47.6
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.4e-32 142.9 180 48.3
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 3.2e-32 142.5 187 46.0
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.2e-32 142.5 194 47.4
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.1e-32 142.1 181 47.5
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 7.1e-32 141.4 170 49.4
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.2e-32 141.0 182 47.8
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.6e-31 140.2 182 50.0
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.6e-31 140.2 204 45.1
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.6e-31 140.2 186 47.8
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.1e-31 139.8 182 47.8
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.1e-31 139.8 181 47.0
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.1e-31 139.8 179 46.9
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.7e-31 139.4 182 47.8
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.5e-31 139.0 180 46.7
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 4.6e-31 138.7 188 43.6
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 4.6e-31 138.7 182 46.7
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 6.0e-31 138.3 181 49.2
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.8e-31 137.9 181 47.0
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.0e-30 137.5 183 47.0
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.0e-30 137.5 183 45.4
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.0e-30 137.5 181 49.7
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.0e-30 136.0 199 44.2
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 3.0e-30 136.0 172 50.0
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 3.0e-30 136.0 177 46.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 6.6e-30 134.8 167 47.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.6e-30 134.4 183 45.9
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 1.1e-29 134.0 169 49.7
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.5e-29 133.7 176 49.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.5e-29 133.7 180 47.2
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.5e-29 133.7 170 47.6
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.9e-29 133.3 205 44.4
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.9e-29 133.3 183 45.4
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.5e-29 132.9 181 45.9
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.5e-29 132.9 187 44.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 4.3e-29 132.1 178 44.9
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 5.6e-29 131.7 187 43.3
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 7.3e-29 131.3 189 47.1
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 9.6e-29 131.0 180 46.7
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.2e-28 130.6 165 46.1
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.6e-28 130.2 175 48.6
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.1e-28 129.8 168 44.6
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.1e-28 129.8 172 45.9
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 2.1e-28 129.8 189 46.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.1e-28 129.8 189 46.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.1e-28 129.8 189 46.0
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.8e-28 129.4 190 44.2
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.8e-28 129.4 192 46.4
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.6e-28 129.0 188 43.6
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.2e-28 128.3 189 46.0
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 8.1e-28 127.9 180 42.8
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.1e-28 127.9 206 42.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 8.1e-28 127.9 178 47.2
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.1e-27 127.5 189 43.9
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.1e-27 127.5 172 46.5
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-27 127.5 169 45.6
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.8e-27 126.7 180 44.4
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.4e-27 126.3 169 46.2
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.1e-27 125.9 187 42.2
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.1e-27 125.9 189 43.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.1e-27 125.9 172 43.0
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 3.1e-27 125.9 175 49.1
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 5.2e-27 125.2 169 43.8
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.9e-27 124.8 184 42.9
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 6.9e-27 124.8 177 46.9
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 6.9e-27 124.8 174 44.8
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.9e-27 124.4 176 44.9
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 2.0e-26 123.2 186 43.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.6e-26 122.9 198 45.5
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.6e-26 122.9 186 41.4
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.4e-26 122.5 195 41.0
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 4.4e-26 122.1 205 40.5
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 5.8e-26 121.7 185 43.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 5.8e-26 121.7 120 55.8
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 9.9e-26 120.9 178 44.9
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 9.9e-26 120.9 127 55.1
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.7e-25 120.2 175 45.7
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.7e-25 120.2 180 43.9
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.7e-25 120.2 180 43.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.7e-25 120.2 180 44.4
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-25 119.8 190 43.2
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 3.8e-25 119.0 192 40.6
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 3.8e-25 119.0 186 42.5
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 3.8e-25 119.0 193 43.0
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 6.4e-25 118.2 175 45.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 6.4e-25 118.2 184 42.4
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 6.4e-25 118.2 189 42.9
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 8.4e-25 117.9 154 50.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.1e-24 117.5 183 42.1
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.4e-24 117.1 186 42.5
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.4e-24 117.1 180 41.7
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-24 116.7 186 42.5
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.9e-24 116.7 185 43.2
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.4e-24 116.3 170 42.9
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.4e-24 116.3 177 43.5
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.2e-24 115.9 173 43.4
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 3.2e-24 115.9 175 44.6
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 4.2e-24 115.5 209 40.2
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.1e-24 114.8 151 45.7
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.1e-24 114.8 183 41.0
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 9.3e-24 114.4 191 40.3
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 9.3e-24 114.4 191 40.3
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 9.3e-24 114.4 184 42.4
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 9.3e-24 114.4 182 44.5
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-23 114.0 192 40.1
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.7e-23 112.8 184 38.6
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 4.6e-23 112.1 190 39.5
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 4.6e-23 112.1 168 42.9
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 7.8e-23 111.3 182 41.2
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 7.8e-23 111.3 173 41.6
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 7.8e-23 111.3 194 41.2
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.7e-22 110.2 146 44.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.7e-22 110.2 124 51.6
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.7e-22 110.2 187 40.1
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.9e-21 106.7 172 43.6
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.9e-21 106.7 184 41.3
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.3e-21 105.5 155 43.9
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 7.3e-21 104.8 154 43.5
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 9.6e-21 104.4 150 43.3
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 9.6e-21 104.4 173 42.8
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 3.6e-20 102.4 113 49.6
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 8.1e-20 101.3 180 42.2
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.1e-19 100.9 170 40.0
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 4.0e-19 99.0 155 43.2
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.3e-19 98.6 179 39.1
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.9e-19 98.2 149 39.6
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.4e-16 89.7 115 48.7
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 9.3e-16 87.8 141 39.7
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.6e-15 87.0 141 39.7
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.6e-15 87.0 158 39.9
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 7.9e-15 84.7 106 47.2
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.9e-14 82.4 157 36.3
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.3e-13 79.3 177 39.5
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 1.1e-11 74.3 169 39.6
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.0e-11 72.4 72 52.8
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 5.3e-11 72.0 77 49.4
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 9.0e-11 71.2 157 33.1
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.9e-08 63.5 79 44.3
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.4e-08 63.2 73 47.9
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 6.0e-07 58.5 87 40.2


User provided reference genes

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