Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 5.2e-132 474.6 266 100.0
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 1.2e-125 453.4 266 96.2
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 7.2e-118 427.6 269 90.3
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 4.7e-117 424.9 269 89.6
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 4.7e-117 424.9 269 90.3
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 4.8e-114 414.8 270 88.5
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 1.4e-113 413.3 270 88.1
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 1.2e-112 410.2 270 87.4
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 1.7e-111 406.4 273 87.2
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 3.8e-111 405.2 273 86.8
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 6.1e-109 397.9 271 84.1
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 5.7e-107 391.3 243 87.7
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 6.6e-103 377.9 268 81.0
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 9.5e-94 347.4 270 75.9
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 9.5e-86 320.9 269 69.9
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 4.3e-78 295.4 261 67.0
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 1.1e-76 290.8 257 68.5
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 1.8e-76 290.0 252 67.9
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 2.4e-76 289.7 259 64.5
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 3.1e-76 289.3 249 67.5
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.1e-76 289.3 249 67.9
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 8.9e-76 287.7 249 67.9
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.2e-75 287.3 248 66.9
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 3.4e-75 285.8 270 64.1
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 3.4e-75 285.8 252 68.3
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 5.8e-75 285.0 256 66.8
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 7.6e-75 284.6 248 67.3
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 9.9e-75 284.3 270 65.6
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 1.7e-74 283.5 264 65.9
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 2.2e-74 283.1 269 65.4
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 4.9e-74 282.0 272 62.1
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 8.4e-74 281.2 255 60.8
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 1.9e-73 280.0 255 60.8
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 1.9e-73 280.0 256 62.1
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 2.4e-73 279.6 272 56.2
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 3.2e-73 279.3 252 66.7
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 4.1e-73 278.9 252 66.7
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 1.6e-72 276.9 251 65.7
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 6.0e-72 275.0 270 55.6
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 1.3e-71 273.9 246 64.2
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 1.3e-71 273.9 253 63.2
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 1.7e-71 273.5 256 66.0
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 8.6e-71 271.2 253 62.8
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 1.1e-70 270.8 270 60.4
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 3.3e-70 269.2 269 59.9
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 7.3e-70 268.1 270 63.3
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 7.3e-70 268.1 253 60.9
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 9.6e-70 267.7 248 66.1
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 1.2e-69 267.3 246 61.0
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 2.4e-68 263.1 270 62.6
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 4.0e-68 262.3 251 64.5
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.4e-67 259.2 252 56.7
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 9.9e-67 257.7 253 63.2
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.9e-66 256.1 266 58.6
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 6.4e-66 255.0 269 60.2
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 1.1e-65 254.2 268 59.7
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 7.1e-65 251.5 270 56.7
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 1.2e-64 250.8 260 62.3
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 3.5e-64 249.2 257 62.3
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 4.6e-64 248.8 254 59.1
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 1.0e-63 247.7 251 61.8
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 1.7e-63 246.9 266 55.6
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.5e-62 243.8 223 63.2
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 2.5e-62 243.0 269 60.2
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 4.3e-62 242.3 261 60.5
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 4.3e-62 242.3 253 57.7
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 5.6e-62 241.9 268 56.7
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 7.3e-62 241.5 248 58.5
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 3.6e-61 239.2 258 59.3
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 1.8e-60 236.9 289 52.6
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 1.2e-59 234.2 223 63.7
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 2.0e-59 233.4 239 62.3
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 5.8e-59 231.9 252 57.1
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 7.6e-59 231.5 251 58.6
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 9.9e-59 231.1 272 54.0
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 1.7e-58 230.3 252 55.6
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.2e-57 226.1 252 56.7
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 1.3e-55 220.7 245 57.1
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 1.3e-55 220.7 196 62.2
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 3.9e-55 219.2 252 57.1
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 8.7e-55 218.0 251 57.0
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 8.7e-55 218.0 252 56.0
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 1.5e-54 217.2 254 59.1
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 6.2e-53 211.8 189 60.3
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 1.1e-52 211.1 247 58.3
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 2.4e-52 209.9 256 54.3
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.2e-51 207.6 255 54.5
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 1.2e-51 207.6 222 60.4
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 4.5e-51 205.7 206 58.7
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 3.8e-50 202.6 190 60.5
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 4.6e-48 195.7 257 52.9
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 4.6e-48 195.7 251 53.0
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 7.9e-48 194.9 235 54.9
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 1.5e-46 190.7 254 47.2
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 1.6e-45 187.2 185 54.1
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.1e-45 186.8 237 50.2
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 2.1e-45 186.8 242 50.8
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 7.6e-43 178.3 253 43.9
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 1.4e-41 174.1 154 61.0
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.5e-40 169.5 157 61.1
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 1.5e-38 164.1 252 48.8
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 9.7e-38 161.4 260 40.4
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 1.8e-36 157.1 274 44.9
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.4e-35 152.9 153 52.3
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.7e-32 143.3 163 55.8
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.6e-32 142.9 127 62.2
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 7.9e-32 141.7 261 37.2
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 3.2e-25 119.8 260 36.9
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 9.4e-25 118.2 97 61.9
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 9.4e-25 118.2 97 61.9
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 8.8e-23 111.7 233 41.6
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.7e-21 106.3 224 39.3
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 1.3e-18 97.8 164 40.9
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.8e-15 87.4 76 63.2
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 1.5e-14 84.3 340 24.1
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 7.4e-14 82.0 155 38.1
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 3.1e-12 76.6 45 71.1
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 8.0e-08 62.0 103 42.7
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 1.4e-07 61.2 57 54.4
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 1.5e-06 57.8 88 42.0
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 2.0e-06 57.4 88 36.4


User provided reference genes

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