Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 5.4e-62 240.7 115 100.0
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.9e-60 234.6 113 98.2
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.1e-59 233.0 113 98.2
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.7e-58 227.6 113 95.6
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.4e-56 221.5 113 92.9
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 9.9e-56 219.9 113 92.9
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.9e-55 218.4 113 92.0
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 4.9e-55 217.6 113 92.0
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 8.4e-55 216.9 113 92.0
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 8.4e-55 216.9 113 92.0
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 4.2e-54 214.5 113 90.3
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 9.3e-54 213.4 106 94.3
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 9.3e-54 213.4 113 88.5
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 2.1e-53 212.2 111 90.1
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 2.1e-53 212.2 106 93.4
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.7e-53 211.8 112 87.5
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 3.5e-53 211.5 113 90.3
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.5e-51 206.1 113 89.4
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.5e-51 206.1 113 89.4
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.3e-51 204.9 113 86.7
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 4.3e-51 204.5 115 86.1
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 4.3e-51 204.5 115 86.1
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 7.3e-51 203.8 113 88.5
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 9.6e-51 203.4 113 86.7
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 9.6e-51 203.4 113 86.7
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 9.6e-51 203.4 113 86.7
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-50 203.0 116 86.2
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.3e-50 203.0 103 91.3
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.3e-50 203.0 103 91.3
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 2.1e-50 202.2 113 85.8
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.8e-49 199.1 113 85.0
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 2.7e-45 185.3 106 80.2
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 2.8e-42 175.3 113 73.5
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 3.6e-42 174.9 112 72.3
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 3.6e-42 174.9 116 72.4
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 4.8e-42 174.5 115 73.0
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 4.8e-42 174.5 103 77.7
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 8.1e-42 173.7 115 70.4
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 1.8e-41 172.6 95 80.0
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.8e-41 172.6 92 82.6
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 2.4e-41 172.2 116 70.7
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.4e-41 172.2 110 71.8
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.1e-41 171.8 98 77.6
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.3e-41 171.0 116 72.4
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.3e-41 171.0 116 72.4
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 5.3e-41 171.0 116 70.7
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 9.0e-41 170.2 111 71.2
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.2e-40 169.9 110 72.7
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.5e-40 169.5 105 73.3
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 2.0e-40 169.1 107 73.8
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.6e-40 168.7 98 76.5
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 3.4e-40 168.3 99 77.8
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 3.4e-40 168.3 115 69.6
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 3.4e-40 168.3 117 69.2
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 4.5e-40 167.9 92 80.4
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 4.5e-40 167.9 92 80.4
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 5.8e-40 167.5 100 75.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 7.6e-40 167.2 111 70.3
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 7.6e-40 167.2 91 81.3
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.6e-40 167.2 98 75.5
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 7.6e-40 167.2 118 70.3
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 7.6e-40 167.2 107 73.8
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 9.9e-40 166.8 98 75.5
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 9.9e-40 166.8 98 75.5
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.3e-39 166.4 101 76.2
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.7e-39 166.0 101 76.2
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.2e-39 165.6 95 80.0
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 2.2e-39 165.6 112 68.8
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 2.2e-39 165.6 96 78.1
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 2.9e-39 165.2 91 81.3
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 2.9e-39 165.2 96 79.2
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 2.9e-39 165.2 115 67.0
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 3.8e-39 164.9 114 70.2
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 3.8e-39 164.9 91 79.1
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 3.8e-39 164.9 117 66.7
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 4.9e-39 164.5 112 67.9
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 4.9e-39 164.5 112 72.3
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 6.4e-39 164.1 116 68.1
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 8.4e-39 163.7 113 68.1
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 8.4e-39 163.7 101 75.2
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 8.4e-39 163.7 101 74.3
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.1e-38 163.3 115 68.7
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.1e-38 163.3 92 80.4
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.4e-38 162.2 98 73.5
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 3.2e-38 161.8 117 68.4
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 4.2e-38 161.4 112 67.0
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 7.1e-38 160.6 100 77.0
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 9.3e-38 160.2 116 64.7
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 9.3e-38 160.2 103 73.8
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.6e-37 159.5 115 63.5
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.6e-37 159.5 111 69.4
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 2.1e-37 159.1 116 65.5
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.1e-37 159.1 110 67.3
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 2.1e-37 159.1 89 79.8
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 2.7e-37 158.7 96 74.0
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.5e-37 158.3 92 76.1
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.5e-37 158.3 92 76.1
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 6.0e-37 157.5 107 66.4
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 7.9e-37 157.1 117 65.8
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 7.9e-37 157.1 111 65.8
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.0e-36 156.8 118 65.3
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 1.0e-36 156.8 96 75.0
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 1.0e-36 156.8 92 73.9
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.0e-36 156.8 91 80.2
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.8e-36 156.0 110 64.5
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.8e-36 156.0 95 74.7
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.8e-36 156.0 86 77.9
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 2.3e-36 155.6 91 76.9
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 3.0e-36 155.2 115 62.6
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 3.0e-36 155.2 115 62.6
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.0e-36 155.2 91 75.8
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.0e-36 155.2 112 66.1
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 3.0e-36 155.2 95 72.6
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 3.9e-36 154.8 112 66.1
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 8.7e-36 153.7 85 77.6
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 8.7e-36 153.7 90 75.6
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 8.7e-36 153.7 92 76.1
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.1e-35 153.3 111 65.8
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.5e-35 152.9 110 66.4
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 1.5e-35 152.9 84 79.8
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 2.5e-35 152.1 110 66.4
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 3.3e-35 151.8 108 67.6
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 4.3e-35 151.4 119 63.0
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 5.6e-35 151.0 83 80.7
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 7.4e-35 150.6 109 65.1
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 9.6e-35 150.2 108 66.7
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 9.6e-35 150.2 108 66.7
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.3e-34 149.8 78 80.8
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 3.7e-34 148.3 109 64.2
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.8e-33 146.0 100 68.0
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.8e-33 146.0 98 66.3
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.8e-33 146.0 103 67.0
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.1e-33 145.2 107 66.4
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 3.1e-33 145.2 115 60.0
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 6.9e-33 144.1 108 64.8
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 9.0e-33 143.7 115 59.1
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.0e-32 142.5 88 70.5
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 3.5e-29 131.7 83 66.3
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 1.8e-28 129.4 74 78.4
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.1e-27 126.7 84 63.1
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.1e-27 126.7 118 54.2
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 2.5e-27 125.6 63 90.5
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.5e-24 116.3 78 66.7
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 1.9e-22 109.4 87 63.2
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 1.6e-21 106.3 78 62.8
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.1e-19 100.1 68 75.0
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 1.9e-19 99.4 85 52.9
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 4.3e-19 98.2 82 54.9
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.7e-18 95.1 112 52.7
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 6.3e-18 94.4 61 73.8
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.8e-17 92.8 53 77.4
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 9.0e-17 90.5 113 45.1
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 1.1e-14 83.6 73 50.7
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.8e-12 76.3 71 50.7
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.1e-11 73.6 64 53.1
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 3.4e-08 62.0 46 63.0
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 1.3e-07 60.1 40 70.0


User provided reference genes

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