Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.2e-116 423.7 297 100.0
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.9e-106 389.8 298 95.3
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 1.1e-93 347.4 300 90.3
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 8.7e-80 301.2 299 84.3
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 5.6e-79 298.5 299 82.3
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 1.7e-75 287.0 303 79.9
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 1.7e-75 287.0 303 79.9
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 1.7e-75 287.0 303 79.9
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 3.2e-74 282.7 302 78.8
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.5e-71 273.1 305 80.0
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 7.4e-71 271.6 302 77.5
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 5.1e-64 248.8 307 74.3
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 4.7e-49 199.1 299 65.2
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 2.4e-45 186.8 312 64.7
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.5e-39 167.5 299 66.6
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 2.2e-38 163.7 307 62.9
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.4e-37 161.0 307 63.8
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 3.1e-37 159.8 301 61.5
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 1.6e-36 157.5 306 59.8
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 2.7e-36 156.8 306 52.9
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 2.7e-36 156.8 306 52.9
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 3.5e-36 156.4 306 59.5
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.2e-35 153.7 305 61.0
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 1.5e-34 151.0 307 61.9
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.6e-33 147.5 296 49.3
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.7e-33 146.7 299 62.9
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 7.0e-29 132.1 269 56.5
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.3e-27 127.9 275 46.2
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.3e-27 127.9 298 59.1
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.3e-27 127.1 298 57.4
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 3.8e-27 126.3 290 55.2
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 3.8e-27 126.3 298 54.7
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 6.6e-27 125.6 278 58.3
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 6.6e-27 125.6 293 54.9
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 8.6e-27 125.2 290 58.6
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 8.6e-27 125.2 295 54.2
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 1.1e-26 124.8 282 56.0
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 2.5e-26 123.6 292 54.1
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.5e-26 123.6 287 55.7
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 2.5e-26 123.6 269 56.5
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 7.2e-26 122.1 285 60.0
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 9.5e-26 121.7 295 56.6
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.6e-25 120.9 285 59.6
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.1e-25 120.6 281 56.6
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.1e-25 120.6 286 56.3
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 3.6e-25 119.8 288 57.3
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 3.6e-25 119.8 291 53.6
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 3.6e-25 119.8 274 59.9
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 3.6e-25 119.8 276 58.0
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 4.7e-25 119.4 288 57.3
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.7e-25 119.4 273 56.4
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 8.0e-25 118.6 282 46.1
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.4e-24 117.9 292 56.8
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.4e-24 117.9 283 58.3
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.8e-24 117.5 283 56.2
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.3e-24 117.1 273 57.9
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 5.2e-24 115.9 301 54.8
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.2e-24 115.9 306 53.3
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 5.2e-24 115.9 283 53.0
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 6.8e-24 115.5 233 59.2
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 8.9e-24 115.2 287 52.6
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 1.2e-23 114.8 271 59.8
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.2e-23 114.8 182 47.3
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.2e-23 114.8 278 57.9
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.5e-23 114.4 270 57.4
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.5e-23 114.4 291 52.9
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 1.5e-23 114.4 284 57.7
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.5e-23 114.4 284 56.0
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.6e-23 113.6 274 55.8
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.6e-23 113.6 275 56.0
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 2.6e-23 113.6 275 56.0
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.7e-23 112.5 291 52.6
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 5.7e-23 112.5 296 55.4
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.3e-22 111.3 291 52.2
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 1.7e-22 110.9 292 52.4
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.7e-22 110.9 292 52.4
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 1.7e-22 110.9 273 57.1
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.2e-22 110.5 284 53.2
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.8e-22 110.2 277 57.4
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.8e-22 110.2 270 55.9
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 8.3e-22 108.6 283 55.8
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 8.3e-22 108.6 230 64.3
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 8.3e-22 108.6 288 55.2
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.8e-21 107.5 269 57.6
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.8e-21 107.5 297 50.2
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 3.2e-21 106.7 205 42.4
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 5.4e-21 105.9 269 54.6
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 7.0e-21 105.5 295 54.6
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.0e-21 105.5 259 58.3
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 9.2e-21 105.1 275 56.0
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 9.2e-21 105.1 280 55.4
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.2e-20 104.8 282 55.7
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 2.0e-20 104.0 287 52.3
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 2.7e-20 103.6 280 52.9
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 2.7e-20 103.6 269 56.1
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.7e-20 103.6 202 43.6
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 3.5e-20 103.2 320 46.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 4.5e-20 102.8 268 56.3
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 4.5e-20 102.8 193 43.0
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 4.5e-20 102.8 201 42.3
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 7.8e-20 102.1 287 54.7
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 2.3e-19 100.5 287 54.7
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 2.3e-19 100.5 293 54.3
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.3e-19 100.5 298 54.7
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 2.3e-19 100.5 273 55.3
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 5.0e-19 99.4 267 56.6
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 5.0e-19 99.4 291 52.6
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 5.0e-19 99.4 288 43.1
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 6.6e-19 99.0 294 51.4
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.1e-18 98.2 282 50.7
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.1e-18 98.2 260 57.7
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 2.5e-18 97.1 292 53.1
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 5.6e-18 95.9 291 50.2
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 9.5e-18 95.1 288 52.8
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.2e-17 94.7 214 40.7
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.2e-17 94.7 220 35.5
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.2e-17 94.7 260 54.2
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-17 94.4 290 49.3
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.6e-17 94.4 210 39.0
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 2.1e-17 94.0 200 41.0
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 2.1e-17 94.0 243 33.3
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 2.8e-17 93.6 306 49.0
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.7e-17 92.8 200 40.5
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.4e-16 91.3 284 49.3
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 2.3e-16 90.5 300 52.0
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 3.1e-16 90.1 280 53.9
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 5.2e-16 89.4 218 44.5
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.5e-15 87.8 234 60.7
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.5e-15 87.8 297 51.5
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 2.0e-15 87.4 200 41.5
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.0e-15 87.4 181 38.1
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 7.5e-15 85.5 287 51.2
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 9.8e-15 85.1 252 56.0
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.3e-14 84.7 149 42.3
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 2.2e-14 84.0 269 50.6
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 2.2e-14 84.0 310 50.3
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 2.2e-14 84.0 195 64.6
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.9e-14 83.6 281 50.9
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 4.9e-14 82.8 280 40.7
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 4.9e-14 82.8 137 41.6
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 7.0e-13 79.0 152 42.1
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 2.7e-12 77.0 261 54.8
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 2.7e-12 77.0 204 40.2
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.7e-12 77.0 273 51.3
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.0e-11 75.1 279 49.8
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.3e-11 74.7 180 35.6
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 1.7e-11 74.3 287 48.1
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.7e-11 74.3 262 51.1
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.3e-11 73.9 155 72.9
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 2.3e-11 73.9 137 39.4
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 6.6e-11 72.4 266 48.5
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 6.6e-11 72.4 289 47.8
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 2.5e-10 70.5 271 42.1
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 9.5e-10 68.6 297 47.8
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 8.0e-09 65.5 261 27.2
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 6.8e-08 62.4 298 46.3
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 1.5e-07 61.2 230 37.4
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 1.5e-07 61.2 286 37.8
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 4.4e-07 59.7 41 70.7
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.3e-06 58.2 128 41.4
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 3.7e-06 56.6 71 45.1
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 4.9e-06 56.2 137 41.6


User provided reference genes

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