Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 2.4e-39 165.2 97 100.0
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 6.2e-35 150.6 97 93.8
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.1e-28 129.8 97 74.2
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 4.3e-28 127.9 97 73.2
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 4.3e-28 127.9 97 73.2
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 9.6e-28 126.7 97 74.2
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 2.1e-27 125.6 97 81.4
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 3.7e-27 124.8 97 71.1
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 8.1e-27 123.6 97 80.4
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.1e-26 123.2 97 78.4
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 4.0e-26 121.3 97 79.4
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 4.0e-26 121.3 97 79.4
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 5.3e-26 120.9 99 79.8
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 5.3e-26 120.9 97 70.1
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 5.3e-26 120.9 97 70.1
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 1.2e-25 119.8 99 78.8
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 4.5e-25 117.9 99 67.7
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 4.5e-25 117.9 99 67.7
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 4.5e-25 117.9 99 67.7
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 7.6e-25 117.1 98 70.4
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 3.2e-23 111.7 98 65.3
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 1.2e-22 109.8 100 78.0
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 4.8e-11 71.2 97 54.6
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.3e-10 67.8 97 44.3
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 9.0e-10 67.0 97 41.2
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.2e-09 66.6 99 44.4
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.5e-09 66.2 106 43.4
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.0e-09 65.9 30 93.3
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.0e-09 65.9 30 93.3
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.0e-09 65.9 30 93.3
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.6e-09 65.5 30 93.3
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.6e-09 65.5 30 93.3
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.6e-09 65.5 30 93.3
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 2.6e-09 65.5 30 93.3
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 4.5e-09 64.7 62 61.3
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 5.9e-09 64.3 30 90.0
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 7.6e-09 63.9 30 90.0
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 7.6e-09 63.9 30 86.7
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 7.6e-09 63.9 30 86.7
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 7.6e-09 63.9 95 46.3
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.0e-08 63.5 30 90.0
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 1.0e-08 63.5 30 86.7
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.0e-08 63.5 30 86.7
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.0e-08 63.5 30 86.7
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 1.0e-08 63.5 30 90.0
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.3e-08 63.2 30 86.7
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.3e-08 63.2 30 83.3
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 1.3e-08 63.2 30 83.3
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.3e-08 63.2 29 89.7
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.3e-08 63.2 30 90.0
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 1.7e-08 62.8 97 43.3
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 2.2e-08 62.4 30 86.7
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 2.2e-08 62.4 30 83.3
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.2e-08 62.4 30 86.7
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 2.2e-08 62.4 30 86.7
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 2.2e-08 62.4 30 86.7
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 2.9e-08 62.0 30 83.3
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 2.9e-08 62.0 30 83.3
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.9e-08 62.0 30 86.7
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.8e-08 61.6 30 83.3
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.8e-08 61.6 62 59.7
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.8e-08 61.6 30 86.7
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.8e-08 61.6 30 86.7
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 5.0e-08 61.2 30 86.7
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 5.0e-08 61.2 30 83.3
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.0e-08 61.2 64 51.6
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 5.0e-08 61.2 64 51.6
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 5.0e-08 61.2 29 86.2
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 5.0e-08 61.2 30 83.3
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 6.5e-08 60.8 30 83.3
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.5e-08 60.8 30 80.0
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.5e-08 60.8 30 80.0
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.5e-08 60.8 30 80.0
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.5e-08 60.8 30 80.0
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 6.5e-08 60.8 98 52.0
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 6.5e-08 60.8 30 83.3
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.5e-08 60.5 64 50.0
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 8.5e-08 60.5 30 90.0
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.1e-07 60.1 61 49.2
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.4e-07 59.7 30 80.0
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.4e-07 59.7 30 76.7
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.4e-07 59.7 30 83.3
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.9e-07 59.3 95 48.4
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 1.9e-07 59.3 98 49.0
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.9e-07 59.3 30 80.0
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.5e-07 58.9 28 85.7
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.5e-07 58.9 30 80.0
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.5e-07 58.9 95 41.1
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.5e-07 58.9 30 83.3
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.5e-07 58.9 30 76.7
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 2.5e-07 58.9 30 76.7
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 2.5e-07 58.9 30 80.0
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 3.2e-07 58.5 99 36.4
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 3.2e-07 58.5 63 49.2
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 3.2e-07 58.5 30 80.0
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 3.2e-07 58.5 30 80.0
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.2e-07 58.5 30 80.0
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.2e-07 58.5 30 76.7
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.2e-07 58.5 30 76.7
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 4.2e-07 58.2 30 76.7
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 4.2e-07 58.2 30 80.0
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 4.2e-07 58.2 30 76.7
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 5.5e-07 57.8 30 76.7
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 7.2e-07 57.4 28 78.6
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 7.2e-07 57.4 30 76.7
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 7.2e-07 57.4 28 82.1
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 9.3e-07 57.0 30 80.0
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 9.3e-07 57.0 30 76.7
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.2e-06 56.6 98 37.8
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 2.1e-06 55.8 73 46.6
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.7e-06 55.5 30 76.7
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.7e-06 55.5 30 70.0
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.6e-06 55.1 30 73.3
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 3.6e-06 55.1 61 47.5
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 3.6e-06 55.1 30 70.0
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 3.6e-06 55.1 97 40.2
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 3.6e-06 55.1 98 43.9
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.6e-06 54.7 30 73.3
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.6e-06 54.7 30 73.3
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 4.6e-06 54.7 50 50.0
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 4.6e-06 54.7 96 38.5
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.6e-06 54.7 30 76.7
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 4.6e-06 54.7 30 76.7
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.1e-06 54.3 97 39.2
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 6.1e-06 54.3 30 73.3
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 7.9e-06 53.9 77 42.9
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.9e-06 53.9 30 70.0


User provided reference genes

Program Settings