Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.5e-246 855.9 475 100.0
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.9e-217 759.2 484 89.9
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.4e-188 662.5 490 80.6
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 2.5e-185 652.5 482 80.7
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 1.3e-181 640.2 489 79.3
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 3.5e-171 605.5 500 77.4
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 2.7e-168 595.9 489 70.6
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 4.0e-167 592.0 487 70.8
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 7.7e-163 577.8 480 73.8
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 7.7e-163 577.8 480 73.8
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 7.7e-163 577.8 480 73.8
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 4.0e-159 565.5 481 69.2
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 4.0e-159 565.5 481 69.2
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 5.7e-158 561.6 483 70.2
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 9.8e-158 560.8 483 69.2
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.5e-150 537.0 475 63.2
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 2.0e-150 536.6 405 74.8
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.6e-147 526.9 417 73.1
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.6e-147 526.9 417 73.1
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.6e-147 526.9 417 73.1
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.3e-143 513.1 491 62.7
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.2e-142 510.8 402 71.4
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.8e-136 489.6 403 70.5
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.4e-132 477.2 485 61.6
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.5e-129 467.2 397 68.0
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.4e-127 460.7 412 68.4
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 4.3e-113 412.5 490 52.0
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 7.3e-113 411.8 508 52.0
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.6e-112 409.5 486 52.9
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 4.7e-112 409.1 510 51.6
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 6.2e-112 408.7 522 51.1
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.2e-109 400.2 509 50.5
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.4e-108 396.7 517 50.5
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.3e-106 391.0 505 51.1
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.1e-106 389.0 505 50.7
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.4e-103 380.9 520 50.2
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.8e-103 380.6 490 50.0
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 5.3e-103 379.0 503 48.5
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 3.4e-102 376.3 462 50.0
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 4.5e-102 375.9 514 47.7
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 7.6e-102 375.2 465 49.7
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.9e-101 373.2 504 45.8
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 4.9e-101 372.5 505 46.5
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 8.4e-101 371.7 468 48.9
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 2.4e-100 370.2 495 50.1
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 7.1e-100 368.6 524 49.2
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.2e-99 367.9 477 49.1
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 6.0e-99 365.5 480 48.5
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.0e-98 363.2 524 45.8
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 3.0e-98 363.2 533 45.2
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.9e-98 362.8 481 46.6
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 5.1e-98 362.5 544 48.5
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.1e-98 362.5 450 49.6
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.9e-97 360.5 524 48.9
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 2.5e-97 360.1 526 49.2
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.3e-97 359.8 478 48.3
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.4e-97 358.6 478 47.1
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 2.1e-96 357.1 530 44.7
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.7e-96 356.3 517 46.0
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.1e-95 354.8 442 50.5
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 9.0e-95 351.7 480 45.6
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 3.4e-94 349.7 480 43.8
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 8.4e-93 345.1 492 44.5
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.4e-92 344.4 498 44.8
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.4e-92 344.4 484 46.3
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.9e-92 344.0 480 47.1
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 4.2e-92 342.8 453 47.2
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 5.5e-92 342.4 517 46.8
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 9.3e-92 341.7 468 45.3
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 2.1e-91 340.5 459 46.6
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 4.6e-91 339.3 475 46.5
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 4.6e-91 339.3 499 46.3
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.3e-90 337.8 547 41.7
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 3.0e-90 336.7 470 47.0
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 8.7e-90 335.1 499 45.3
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.5e-89 333.6 475 45.7
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.6e-88 330.9 372 51.1
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 2.1e-88 330.5 460 47.0
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 4.8e-88 329.3 464 46.1
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.4e-87 327.8 483 44.9
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 3.1e-87 326.6 383 53.0
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 3.1e-87 326.6 504 47.2
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 3.1e-87 326.6 465 46.2
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 5.3e-87 325.9 462 45.2
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 9.0e-87 325.1 486 49.2
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.2e-86 324.7 505 47.1
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 2.0e-86 323.9 443 46.5
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.6e-86 323.6 462 43.7
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 4.5e-86 322.8 482 45.6
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.9e-85 320.1 490 43.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 4.9e-85 319.3 467 43.7
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 8.4e-85 318.5 468 44.9
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.4e-84 317.8 488 44.3
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.9e-84 317.4 492 43.5
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 2.5e-84 317.0 363 50.4
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 7.1e-84 315.5 444 45.9
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 3.5e-83 313.2 517 42.2
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.3e-82 311.2 358 50.3
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 3.9e-82 309.7 414 49.0
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 5.1e-82 309.3 388 49.2
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 5.1e-82 309.3 391 49.1
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.5e-81 307.0 410 45.9
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 3.3e-81 306.6 496 41.9
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 4.3e-81 306.2 432 44.7
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 4.3e-81 306.2 436 45.2
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.8e-79 300.8 397 43.8
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 3.1e-79 300.1 478 42.7
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.2e-78 298.1 439 43.7
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.2e-78 298.1 365 49.0
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.7e-77 294.3 440 43.6
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.7e-77 294.3 357 46.5
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 2.9e-77 293.5 478 39.3
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 6.5e-77 292.4 359 47.6
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 2.5e-76 290.4 373 46.1
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 5.5e-76 289.3 373 46.6
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 1.0e-74 285.0 347 49.6
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.7e-72 277.7 303 51.8
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 2.2e-72 277.3 359 46.8
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.5e-70 271.2 365 45.8
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.0e-69 268.5 470 44.0
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 2.2e-69 267.3 460 38.3
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 3.8e-69 266.5 366 44.0
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.9e-68 264.2 354 43.8
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.5e-68 263.8 381 43.3
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.2e-68 263.1 371 44.5
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 5.5e-68 262.7 472 40.3
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 2.1e-67 260.8 307 48.5
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 3.6e-67 260.0 409 41.6
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 5.1e-66 256.1 336 46.1
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 4.4e-65 253.1 438 40.4
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 7.7e-62 242.3 302 47.7
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.1e-59 234.2 178 74.2
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.6e-59 233.4 179 73.7
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 8.0e-59 232.3 337 43.6
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 4.4e-57 226.5 442 37.6
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.3e-56 224.9 270 52.2
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.8e-55 221.1 427 36.8
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.5e-54 216.9 416 35.8
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 8.8e-50 202.2 482 34.2
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.5e-49 201.4 303 41.3
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.8e-48 196.4 224 50.0
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.4e-47 194.1 544 30.9
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.4e-47 194.1 544 30.9
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.6e-35 154.8 226 39.4
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.9e-34 149.1 223 39.5
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.8e-33 145.6 295 36.3
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.8e-32 144.1 289 31.8
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.1e-31 140.2 414 28.0
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.7e-30 137.5 415 28.4
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 7.3e-28 129.4 344 29.7
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.6e-27 128.3 366 29.5
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.5e-25 121.7 238 32.8
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.8e-25 119.8 426 25.6
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.9e-24 117.5 317 31.2
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 6.0e-22 109.8 166 42.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 4.0e-18 97.1 150 42.7
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 2.0e-17 94.7 128 38.3
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.9e-16 90.9 130 39.2
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.6e-14 85.1 98 48.0
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 3.5e-14 84.0 95 58.9
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 1.7e-13 81.6 92 45.7


User provided reference genes

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