Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 3.7e-124 448.4 246 100.0
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 3.3e-109 398.7 253 91.7
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 3.3e-85 318.9 259 73.4
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 6.3e-84 314.7 260 71.9
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.1e-83 313.9 257 72.4
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.1e-80 303.9 248 71.4
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 2.1e-79 299.7 246 69.9
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 2.1e-79 299.7 246 69.9
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 1.0e-78 297.4 246 68.3
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 1.0e-78 297.4 246 68.3
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 1.4e-78 297.0 246 68.7
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 4.0e-78 295.4 251 71.3
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 1.5e-77 293.5 251 70.9
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 2.6e-77 292.7 251 70.1
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 2.6e-77 292.7 251 70.1
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 2.6e-77 292.7 251 70.1
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.6e-74 283.5 256 67.2
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 4.9e-68 261.9 250 65.6
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 4.3e-64 248.8 270 58.9
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.5e-53 213.8 256 57.0
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.0e-53 213.4 247 55.5
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 2.2e-52 209.9 250 54.8
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 5.4e-51 205.3 249 57.4
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.7e-49 200.3 248 55.6
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 7.3e-48 194.9 262 53.1
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 5.2e-46 188.7 248 49.6
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 4.4e-45 185.7 251 49.4
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 5.8e-45 185.3 251 49.0
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 5.8e-45 185.3 251 49.0
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 5.8e-45 185.3 263 53.2
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 1.1e-43 181.0 253 49.0
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 5.4e-43 178.7 251 52.2
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.0e-41 172.9 258 48.8
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 6.0e-34 148.7 261 44.8
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.0e-33 146.4 257 44.4
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 8.6e-33 144.8 258 43.8
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 4.3e-32 142.5 270 40.0
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.2e-31 141.0 259 44.4
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.2e-31 141.0 260 40.8
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 3.6e-31 139.4 255 42.7
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 4.7e-31 139.0 252 43.3
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 8.1e-31 138.3 252 42.9
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 8.1e-31 138.3 273 40.7
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 5.2e-30 135.6 269 42.0
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 2.0e-29 133.7 250 40.8
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 2.0e-29 133.7 247 40.5
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 2.6e-29 133.3 251 43.4
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 4.4e-29 132.5 274 41.2
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 7.6e-29 131.7 276 39.9
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 9.9e-29 131.3 247 38.9
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 1.3e-28 131.0 277 39.7
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 2.2e-28 130.2 257 42.0
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 6.4e-28 128.6 262 40.8
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 1.1e-27 127.9 250 40.8
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 5.4e-27 125.6 266 41.0
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 5.4e-27 125.6 265 41.5
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 9.3e-27 124.8 264 40.2
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 2.7e-26 123.2 248 39.5
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 4.6e-26 122.5 259 39.0
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 4.6e-26 122.5 259 39.0
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 6.0e-26 122.1 247 39.3
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.7e-25 120.6 248 40.7
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 3.0e-25 119.8 254 38.6
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 1.1e-24 117.9 253 41.1
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.1e-24 117.9 258 39.5
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.9e-24 117.1 248 39.9
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 3.3e-24 116.3 258 37.6
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 3.3e-24 116.3 263 39.2
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 5.6e-24 115.5 250 37.6
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 5.6e-24 115.5 252 35.7
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 7.3e-24 115.2 244 36.1
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 9.6e-24 114.8 264 39.0
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 1.3e-23 114.4 270 40.4
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.3e-23 114.4 196 42.9
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 2.1e-23 113.6 248 38.3
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 3.6e-23 112.8 259 38.2
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 4.8e-23 112.5 252 38.5
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 8.1e-23 111.7 254 37.4
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.1e-22 111.3 286 35.3
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 2.4e-22 110.2 253 38.3
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 3.1e-22 109.8 242 35.5
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 4.0e-22 109.4 267 39.0
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 9.0e-22 108.2 247 40.5
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.5e-21 107.5 251 37.8
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 1.5e-21 107.5 252 38.5
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.5e-21 107.5 244 37.3
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 3.4e-21 106.3 254 38.6
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 4.5e-21 105.9 250 38.0
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 5.8e-21 105.5 244 36.5
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 7.6e-21 105.1 236 37.7
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 7.6e-21 105.1 225 38.7
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 9.9e-21 104.8 247 40.5
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.3e-20 104.4 231 37.2
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.7e-20 104.0 247 40.5
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 4.9e-20 102.4 260 34.2
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 4.9e-20 102.4 240 36.2
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 6.4e-20 102.1 247 37.7
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 6.4e-20 102.1 255 36.1
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 8.4e-20 101.7 252 37.3
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 8.4e-20 101.7 245 41.2
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 8.4e-20 101.7 181 44.2
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.9e-19 100.5 250 35.2
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 4.2e-19 99.4 235 35.7
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 4.2e-19 99.4 243 36.6
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 7.1e-19 98.6 260 35.0
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.1e-19 98.6 244 36.9
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 7.1e-19 98.6 244 36.9
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 9.3e-19 98.2 247 36.0
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 3.5e-18 96.3 251 36.3
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.0e-18 95.5 244 36.5
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 7.9e-18 95.1 255 35.7
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 1.0e-17 94.7 242 33.9
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 1.3e-17 94.4 242 34.3
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 2.3e-17 93.6 251 34.3
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 3.0e-17 93.2 260 35.4
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 5.1e-17 92.4 248 33.1
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 6.7e-17 92.0 246 32.9
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.1e-16 91.3 191 42.4
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.9e-16 90.5 259 34.0
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 7.4e-16 88.6 182 39.6
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.6e-15 87.4 249 33.3
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.1e-15 87.0 268 32.1
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 2.8e-15 86.7 142 43.7
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 2.4e-14 83.6 199 36.2
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.0e-14 82.8 152 42.1
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 5.3e-14 82.4 149 41.6
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 5.3e-14 82.4 255 33.7
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 6.9e-14 82.0 196 36.7
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 6.9e-14 82.0 255 31.4
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.2e-13 81.3 140 42.1
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 1.5e-13 80.9 244 35.7
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 2.6e-13 80.1 272 30.5
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.4e-13 79.7 151 41.7
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.4e-13 79.7 248 33.1
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 4.5e-13 79.3 149 38.9
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 7.6e-13 78.6 247 33.2
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 9.9e-13 78.2 212 34.4
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 1.3e-12 77.8 145 40.7
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.3e-12 77.8 147 42.9
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 3.8e-12 76.3 250 30.8
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 6.4e-12 75.5 201 37.8
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 3.2e-11 73.2 251 30.3
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 9.3e-11 71.6 246 32.1
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 7.9e-10 68.6 191 32.5
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 6.7e-09 65.5 246 33.3
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 1.5e-08 64.3 165 33.3
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 3.3e-08 63.2 250 29.2
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 4.8e-07 59.3 90 45.6
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 6.2e-07 58.9 168 33.3
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 2.4e-06 57.0 101 40.6
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 6.9e-06 55.5 92 44.6


User provided reference genes

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