Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 0.0e+00 1363.6 701 100.0
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 0.0e+00 1135.2 710 85.9
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 5.1e-288 994.2 730 75.9
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 1.7e-243 846.3 731 66.6
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 1.0e-219 767.3 827 56.8
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 2.6e-199 699.5 814 55.3
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 2.6e-199 699.5 814 55.3
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 4.4e-199 698.7 814 55.4
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 7.1e-197 691.4 818 54.6
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 7.1e-197 691.4 818 54.6
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 2.1e-196 689.9 815 54.5
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 2.4e-160 570.1 553 62.9
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 3.2e-141 506.5 731 48.0
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 1.8e-104 384.4 813 38.9
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 1.1e-61 242.3 869 29.3
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.1e-59 235.7 842 29.2
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.4e-59 235.3 845 29.6
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.8e-59 235.0 847 28.8
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 1.1e-53 215.7 803 28.5
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 2.5e-53 214.5 884 29.3
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 2.1e-52 211.5 903 28.2
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 4.8e-52 210.3 794 29.3
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 3.4e-50 204.1 298 41.9
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 2.3e-46 191.4 776 28.5
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 5.9e-42 176.8 813 26.1
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 5.9e-42 176.8 729 27.6
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 1.7e-41 175.3 810 26.3
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 2.2e-41 174.9 768 26.8
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 5.5e-40 170.2 263 39.9
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 2.7e-39 167.9 746 27.6
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 6.1e-39 166.8 789 27.2
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 1.0e-38 166.0 769 27.8
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 2.5e-37 161.4 774 27.5
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 5.7e-37 160.2 769 27.6
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 9.7e-37 159.5 807 27.1
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 1.3e-36 159.1 766 26.4
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 8.2e-36 156.4 770 27.9
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 8.2e-36 156.4 803 27.1
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 1.4e-35 155.6 969 23.3
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 3.1e-35 154.5 730 28.1
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 4.1e-35 154.1 746 26.9
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 5.3e-35 153.7 729 28.0
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 6.9e-35 153.3 255 40.4
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 1.2e-34 152.5 760 25.0
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.5e-34 152.1 238 40.8
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 2.6e-34 151.4 770 27.1
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 3.4e-34 151.0 263 40.3
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 4.5e-34 150.6 262 38.2
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 5.9e-34 150.2 274 37.2
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 5.9e-34 150.2 749 26.2
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 1.3e-33 149.1 780 24.6
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 1.3e-33 149.1 255 40.4
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 1.7e-33 148.7 704 28.3
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 1.7e-33 148.7 731 26.7
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 3.8e-33 147.5 725 26.9
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 5.0e-33 147.1 826 25.4
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 5.0e-33 147.1 804 26.2
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 5.0e-33 147.1 294 35.0
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 1.1e-32 146.0 256 37.5
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.4e-32 145.6 240 40.8
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 1.9e-32 145.2 245 38.4
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.9e-32 145.2 787 26.6
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 5.5e-32 143.7 783 25.4
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 7.2e-32 143.3 798 24.8
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 1.2e-31 142.5 734 26.2
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 1.6e-31 142.1 138 52.2
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 1.6e-31 142.1 457 29.3
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 2.1e-31 141.7 712 24.6
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 2.7e-31 141.4 766 26.5
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 4.6e-31 140.6 280 34.6
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 6.1e-31 140.2 266 37.6
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 1.8e-30 138.7 764 27.5
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 3.0e-30 137.9 211 43.1
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 2.0e-29 135.2 779 25.2
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 2.0e-29 135.2 665 27.5
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 2.5e-29 134.8 304 34.2
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 7.4e-29 133.3 351 34.2
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 2.2e-28 131.7 253 36.8
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 4.8e-28 130.6 257 36.2
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 6.3e-28 130.2 229 38.0
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 6.3e-28 130.2 278 34.9
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 1.4e-27 129.0 683 26.9
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 1.8e-27 128.6 281 32.7
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 2.4e-27 128.3 766 23.9
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 3.1e-27 127.9 644 26.2
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 4.1e-27 127.5 281 32.4
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 9.1e-27 126.3 314 33.1
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 9.1e-27 126.3 875 24.1
THA.LOC104803300 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 3.4e-26 124.4 190 44.7
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 1.3e-25 122.5 720 26.8
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.3e-25 122.5 316 33.5
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 1.7e-25 122.1 340 33.8
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 3.8e-25 120.9 825 24.0
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 5.0e-25 120.6 256 34.0
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 6.5e-25 120.2 238 34.0
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 1.9e-24 118.6 262 34.0
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.9e-24 118.6 195 40.0
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.6e-23 115.5 864 24.9
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 6.1e-23 113.6 287 31.0
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 1.4e-22 112.5 283 34.3
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 2.2e-20 105.1 125 48.8
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 2.8e-20 104.8 237 32.9
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 3.7e-20 104.4 474 27.8
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 8.2e-20 103.2 352 27.8
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 3.1e-19 101.3 312 28.8
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 5.3e-19 100.5 447 25.3
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 1.2e-18 99.4 216 32.4
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 2.0e-18 98.6 709 23.1
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 2.0e-18 98.6 816 24.1
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 2.0e-18 98.6 136 41.2
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 2.9e-17 94.7 252 32.1
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 5.5e-16 90.5 147 39.5
Atru.chr13.504 Acer truncatum HOM05D005945 ORTHO05D006749 2.4e-11 75.1 401 24.9
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 5.3e-11 73.9 224 29.5
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 9.1e-11 73.2 458 25.5
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 5.9e-10 70.5 64 54.7
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 3.8e-09 67.8 225 27.1
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 2.1e-07 62.0 130 30.8


User provided reference genes

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