Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 4.0e-198 694.9 395 100.0
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 3.1e-187 658.7 396 95.5
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 5.4e-187 657.9 395 95.2
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 6.2e-175 617.8 384 83.6
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.8e-167 592.4 393 80.2
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.5e-165 586.6 384 80.5
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 1.7e-164 583.2 391 77.7
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 4.7e-159 565.1 389 77.4
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 6.2e-159 564.7 391 77.0
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.4e-155 551.6 388 75.3
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.2e-154 550.4 391 76.0
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.5e-152 542.7 391 74.9
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 5.8e-149 531.6 383 74.2
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 5.8e-149 531.6 383 74.2
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.1e-146 523.1 389 70.4
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 2.6e-141 506.1 400 71.0
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 9.3e-139 497.7 389 68.6
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 2.1e-138 496.5 392 70.4
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 2.1e-138 496.5 392 70.4
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 1.1e-136 490.7 390 70.3
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 9.3e-131 471.1 265 89.1
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 6.0e-130 468.4 383 67.4
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 7.9e-122 441.4 383 66.1
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 5.3e-118 428.7 406 58.9
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 2.1e-114 416.8 286 73.4
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 3.6e-114 416.0 279 75.6
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 3.0e-113 412.9 338 64.8
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 3.0e-113 412.9 352 60.8
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 3.3e-112 409.5 267 75.7
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 1.7e-111 407.1 383 58.2
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.7e-111 407.1 266 77.1
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 6.3e-111 405.2 230 89.6
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 6.3e-111 405.2 283 71.0
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.2e-109 401.0 260 76.9
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 1.2e-109 401.0 249 79.9
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.5e-109 400.6 263 74.5
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 2.6e-109 399.8 266 74.1
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 2.2e-108 396.7 273 73.3
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 5.0e-108 395.6 263 74.9
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 8.5e-108 394.8 287 69.0
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 1.9e-107 393.7 284 70.4
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 2.5e-107 393.3 395 56.2
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 2.5e-107 393.3 388 56.2
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 5.5e-107 392.1 256 76.2
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 9.4e-107 391.3 265 72.1
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 2.1e-106 390.2 243 79.0
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 2.7e-106 389.8 277 71.5
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 3.6e-106 389.4 263 73.4
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 4.7e-106 389.0 251 76.9
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 4.7e-106 389.0 251 76.9
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 6.7e-105 385.2 291 66.7
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.1e-104 384.4 263 72.6
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.1e-104 384.4 263 72.6
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.1e-104 384.4 251 75.7
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 1.5e-104 384.0 260 72.7
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 3.3e-104 382.9 256 74.2
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 3.3e-104 382.9 256 74.2
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 4.4e-104 382.5 248 74.2
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 4.4e-104 382.5 268 71.3
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 4.4e-104 382.5 264 72.3
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 7.4e-104 381.7 248 74.2
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 9.7e-104 381.3 249 74.3
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.7e-103 380.6 230 80.0
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 1.7e-103 380.6 262 72.9
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 2.2e-103 380.2 381 56.2
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.7e-103 379.4 237 77.2
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 4.8e-103 379.0 252 73.4
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 6.3e-103 378.6 249 73.9
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 8.2e-103 378.3 281 68.7
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 8.2e-103 378.3 281 68.7
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.4e-102 377.5 258 71.7
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 1.4e-102 377.5 230 79.6
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.8e-102 377.1 264 70.5
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 2.4e-102 376.7 270 70.7
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 2.4e-102 376.7 250 74.8
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 4.1e-102 375.9 252 73.8
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 7.0e-102 375.2 244 74.2
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 7.0e-102 375.2 249 73.1
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 7.0e-102 375.2 266 69.9
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.5e-101 374.0 244 73.8
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 2.6e-101 373.2 254 71.7
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 2.6e-101 373.2 233 76.4
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 5.9e-101 372.1 264 70.8
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.3e-100 370.9 272 69.5
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 1.3e-100 370.9 268 69.0
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 1.7e-100 370.5 253 71.9
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 1.7e-100 370.5 250 72.8
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 2.2e-100 370.2 258 70.9
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 2.9e-100 369.8 271 67.5
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.9e-100 369.8 244 73.8
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 2.9e-100 369.8 269 67.3
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.8e-100 369.4 259 72.2
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 3.8e-100 369.4 253 71.5
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 5.0e-100 369.0 265 69.4
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 3.2e-99 366.3 231 77.1
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 9.4e-99 364.8 293 64.2
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 3.6e-98 362.8 239 72.0
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 1.4e-97 360.9 236 75.8
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 1.4e-97 360.9 225 77.8
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 5.2e-97 359.0 259 69.9
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 5.2e-97 359.0 237 72.6
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 2.0e-96 357.1 246 70.3
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 3.3e-96 356.3 395 55.2
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.4e-96 355.9 261 68.6
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 1.7e-95 354.0 237 71.7
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.8e-95 353.2 257 66.5
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 3.1e-94 349.7 225 74.2
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 3.8e-92 342.8 219 74.9
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 8.5e-92 341.7 250 66.8
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 4.2e-91 339.3 201 82.6
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.8e-86 323.9 240 67.1
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 2.7e-85 320.1 245 65.3
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 1.1e-83 314.7 264 61.4
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.5e-83 314.3 243 64.6
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.2e-83 313.2 181 86.2
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 7.2e-83 312.0 178 84.3
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 1.8e-81 307.4 179 84.4
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 8.8e-81 305.1 228 70.2
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.1e-75 288.1 235 60.4
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.9e-75 287.3 234 60.3
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 4.0e-73 279.6 211 65.4
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 8.9e-73 278.5 223 61.4
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 2.2e-71 273.9 177 76.8
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 3.9e-68 263.1 179 70.4
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.2e-64 251.5 155 76.8
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.1e-62 243.0 140 83.6
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 9.2e-62 241.9 153 76.5
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 4.0e-57 226.5 144 75.0
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.5e-56 224.6 267 50.6
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 9.8e-56 221.9 117 94.9
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 9.8e-56 221.9 117 95.7
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 3.2e-54 216.9 117 93.2
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 3.2e-54 216.9 117 93.2
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 9.2e-54 215.3 117 92.3
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 9.2e-54 215.3 117 92.3
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 1.0e-52 211.8 112 93.8
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 5.1e-52 209.5 112 92.9
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 5.6e-51 206.1 112 92.0
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 3.6e-50 203.4 251 48.6
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 6.2e-50 202.6 226 46.5
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.8e-49 201.1 226 46.0
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 5.4e-46 189.5 102 91.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 5.4e-46 189.5 102 91.2
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 3.3e-43 180.3 267 42.7
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 2.2e-39 167.5 265 37.7
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 2.2e-39 167.5 254 38.6
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 6.4e-39 166.0 89 95.5
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 6.4e-39 166.0 89 95.5
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 1.1e-38 165.2 89 94.4
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 1.6e-37 161.4 110 76.4
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.6e-34 151.4 121 66.1
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 9.0e-33 145.6 91 75.8
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.3e-31 141.7 129 62.0
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 2.7e-29 134.0 101 64.4
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 7.9e-29 132.5 90 68.9
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 1.7e-28 131.3 90 67.8
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 9.0e-25 119.0 63 93.7
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 9.0e-25 119.0 125 49.6
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.4e-24 117.1 88 65.9
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.2e-23 114.4 79 68.4
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 2.2e-23 114.4 82 65.9
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 1.6e-21 108.2 65 75.4
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 1.8e-20 104.8 64 81.2
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.1e-19 102.1 63 73.0
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.5e-19 101.7 200 32.5
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 4.9e-15 86.7 47 91.5
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 1.4e-14 85.1 44 95.5
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 4.6e-13 80.1 68 64.7


User provided reference genes

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