Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G56210 Arabidopsis thaliana HOM05D002744 ORTHO05D008989 4.5e-101 371.3 194 100.0
AL5G37530 Arabidopsis lyrata HOM05D002744 ORTHO05D008989 2.5e-91 339.0 195 94.4
Carub.0005s2299 Capsella rubella HOM05D002744 ORTHO05D008989 5.1e-89 331.3 195 91.3
Thhalv10006252m.g Eutrema salsugineum HOM05D002744 ORTHO05D008989 1.0e-84 317.0 194 85.6
Sp5g06290 Schrenkiella parvula HOM05D002744 ORTHO05D008989 1.1e-83 313.5 194 85.1
BcaB08g34630 Brassica carinata HOM05D002744 ORTHO05D008989 1.8e-81 306.2 194 83.5
CARHR166360 Cardamine hirsuta HOM05D002744 ORTHO05D008989 5.1e-81 304.7 179 90.5
A09p49190 Brassica napus HOM05D002744 ORTHO05D008989 1.5e-80 303.1 194 82.5
BraA09t40372Z Brassica rapa HOM05D002744 ORTHO05D008989 1.5e-80 303.1 201 80.6
THA.LOC104824346 Tarenaya hassleriana HOM05D002744 ORTHO05D008989 3.8e-68 261.9 183 75.4
BcaC07g39936 Brassica carinata HOM05D002744 ORTHO05D008989 1.4e-62 243.4 142 85.9
Duzib114G0765 Durio zibethinus HOM05D002744 ORTHO05D008989 1.4e-62 243.4 194 64.9
C08p31530 Brassica napus HOM05D002744 ORTHO05D008989 2.4e-62 242.7 185 70.8
Gohir.D04G071200 Gossypium hirsutum HOM05D002744 ORTHO05D008989 5.4e-62 241.5 192 64.1
Ciclev10032836m.g Citrus clementina HOM05D002744 ORTHO05D008989 3.5e-61 238.8 192 63.5
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.7e-60 236.5 169 71.6
BolC8t50775H Brassica oleracea HOM05D002744 ORTHO05D008989 2.2e-60 236.1 190 67.4
PGR142G3983 Punica granatum HOM05D002744 ORTHO05D008989 3.8e-60 235.3 185 66.5
Eucgr.G03110 Eucalyptus grandis HOM05D002744 ORTHO05D008989 5.0e-60 235.0 182 66.5
CiPaw.02G197300 Carya illinoinensis HOM05D002744 ORTHO05D008989 8.5e-60 234.2 193 63.2
Thecc.10G007100 Theobroma cacao HOM05D002744 ORTHO05D008989 8.5e-60 234.2 192 63.0
BcaB01g00016 Brassica carinata HOM05D002744 ORTHO05D008989 1.1e-59 233.8 160 78.8
Gohir.A05G332500 Gossypium hirsutum HOM05D002744 ORTHO05D008989 1.1e-59 233.8 194 62.9
GSVIVG01032723001 Vitis vinifera HOM05D002744 ORTHO05D008989 1.1e-59 233.8 192 64.1
Nn2g11068 Nelumbo nucifera HOM05D002744 ORTHO05D008989 1.5e-59 233.4 191 62.8
Haze_17321 Corylus avellana HOM05D002744 ORTHO05D008989 6.1e-58 228.0 193 61.7
Rhsim09G0182800 Rhododendron simsii HOM05D002744 ORTHO05D008989 6.1e-58 228.0 183 65.6
QL08p064284 Quercus lobata HOM05D002744 ORTHO05D008989 1.0e-57 227.3 193 60.6
Gorai.012G080100 Gossypium raimondii HOM05D002744 ORTHO05D008989 3.0e-57 225.7 204 59.8
Peaxi162Scf00284g00123 Petunia axillaris HOM05D002744 ORTHO05D008989 1.2e-56 223.8 193 61.1
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 2.0e-56 223.0 172 66.3
Glyma.11G234700 Glycine max HOM05D002744 ORTHO05D008989 3.4e-56 222.2 183 62.3
BcaB01g00017 Brassica carinata HOM05D002744 ORTHO05D008989 4.4e-56 221.9 176 72.2
CANSAT56G2966 Cannabis sativa HOM05D002744 ORTHO05D008989 4.4e-56 221.9 193 60.1
Dinv21809 Davidia involucrata HOM05D002744 ORTHO05D008989 7.5e-56 221.1 183 61.7
TWI38G2197 Tripterygium wilfordii HOM05D002744 ORTHO05D008989 9.8e-56 220.7 188 61.7
Cc02_g05720 Coffea canephora HOM05D002744 ORTHO05D008989 3.7e-55 218.8 182 61.0
Glyma.18G022300 Glycine max HOM05D002744 ORTHO05D008989 4.9e-55 218.4 193 59.6
Actinidia00986 Actinidia chinensis HOM05D002744 ORTHO05D008989 6.3e-55 218.0 193 59.1
AUR62022976 Chenopodium quinoa HOM05D002744 ORTHO05D008989 6.3e-55 218.0 182 62.6
Sopen02g021690 Solanum pennellii HOM05D002744 ORTHO05D008989 6.3e-55 218.0 193 60.1
Nitab4.5_0000928g0050 Nicotiana tabacum HOM05D002744 ORTHO05D008989 3.1e-54 215.7 182 61.5
RcHm_v2.0_Chr1g0371481 Rosa chinensis HOM05D002744 ORTHO05D008989 4.1e-54 215.3 186 60.2
EL10Ac2g04293 Beta vulgaris HOM05D002744 ORTHO05D008989 5.4e-54 214.9 183 62.3
Manes.10G008400 Manihot esculenta HOM05D002744 ORTHO05D008989 9.2e-54 214.2 183 61.2
PSO017G6389 Papaver somniferum HOM05D002744 ORTHO05D008989 1.6e-53 213.4 186 60.2
Sed0024728 Sechium edule HOM05D002744 ORTHO05D008989 1.6e-53 213.4 192 57.3
vmacro09984 Vaccinium macrocarpon HOM05D002744 ORTHO05D008989 2.7e-53 212.6 221 55.2
arahy.Tifrunner.gnm1.ann1.HIE7A8 Arachis hypogaea HOM05D002744 ORTHO05D008989 4.5e-53 211.8 193 56.5
CsaV3_5G010720 Cucumis sativus L. HOM05D002744 ORTHO05D008989 4.5e-53 211.8 194 57.2
MD07G1229300 Malus domestica HOM05D002744 ORTHO05D008989 5.9e-53 211.5 186 60.2
PSO170G0776 Papaver somniferum HOM05D002744 ORTHO05D008989 5.9e-53 211.5 186 59.7
Atru.BG.256.p Acer truncatum HOM05D002744 ORTHO05D008989 1.0e-52 210.7 151 68.9
HanXRQChr17g0560791 Helianthus annuus HOM05D002744 ORTHO05D008989 1.0e-52 210.7 186 59.7
Hund13513 Selenicereus undatus HOM05D002744 ORTHO05D008989 1.3e-52 210.3 183 59.6
arahy.Tifrunner.gnm1.ann1.N80L0Z Arachis hypogaea HOM05D002744 ORTHO05D008989 2.9e-52 209.1 183 57.9
arahy.Tifrunner.gnm1.ann1.B5C26Y Arachis hypogaea HOM05D002744 ORTHO05D008989 3.8e-52 208.8 183 57.9
MD01G1161400 Malus domestica HOM05D002744 ORTHO05D008989 3.8e-52 208.8 192 58.3
Medtr3g072120 Medicago truncatula HOM05D002744 ORTHO05D008989 5.0e-52 208.4 194 57.2
Os03g0665800 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D008989 5.0e-52 208.4 164 67.7
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 6.6e-52 208.0 186 58.6
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.1e-51 207.2 186 57.0
Potri.008G075600 Populus trichocarpa HOM05D002744 ORTHO05D008989 1.1e-51 207.2 189 58.2
Ca_15179_v3 Cicer arietinum L. HOM05D002744 ORTHO05D008989 1.5e-51 206.8 193 56.0
FvH4_7g25501 Fragaria vesca HOM05D002744 ORTHO05D008989 1.5e-51 206.8 186 58.1
Migut.A01076 Erythranthe guttata HOM05D002744 ORTHO05D008989 3.3e-51 205.7 192 58.9
Hma1.2p1_1240F.1_g269640 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 3.3e-51 205.7 161 64.6
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.6e-51 204.9 186 57.0
Nitab4.5_0000263g0100 Nicotiana tabacum HOM05D002744 ORTHO05D008989 5.6e-51 204.9 153 66.7
AUR62012334 Chenopodium quinoa HOM05D002744 ORTHO05D008989 7.3e-51 204.5 151 66.9
Phvul.001G248100 Phaseolus vulgaris HOM05D002744 ORTHO05D008989 9.5e-51 204.1 193 56.0
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.6e-50 203.4 161 63.4
Lj6g0011522 Lotus japonicus HOM05D002744 ORTHO05D008989 1.6e-50 203.4 195 58.5
TPR.G28641 Trifolium pratense HOM05D002744 ORTHO05D008989 1.6e-50 203.4 193 56.5
MSTRG.12212 Avicennia marina HOM05D002744 ORTHO05D008989 2.8e-50 202.6 183 57.4
Sabra08G0056200 Salix brachista HOM05D002744 ORTHO05D008989 8.0e-50 201.1 189 55.6
TAR369G0133 Trochodendron aralioides HOM05D000826 ORTHO05D001831 1.8e-49 199.9 154 63.6
DCAR_011891 Daucus carota HOM05D002744 ORTHO05D008989 3.0e-49 199.1 157 65.0
ECA233G4001 Erigeron canadensis HOM05D002744 ORTHO05D008989 6.8e-49 198.0 187 56.1
Lalb_Chr08g0231351 Lupinus albus HOM05D002744 ORTHO05D008989 4.4e-48 195.3 183 56.8
Aa31LG10G11120 Aethionema arabicum HOM05D002744 ORTHO05D008989 5.7e-48 194.9 128 82.8
SalBow3G4547 Salvia bowleyana HOM05D002744 ORTHO05D008989 9.8e-48 194.1 184 56.0
Lju41C22T0 Lonicera japonica HOM05D002744 ORTHO05D008989 1.3e-47 193.7 163 62.6
Lj8C58T1 Lonicera japonica HOM05D002744 ORTHO05D008989 3.7e-47 192.2 163 62.0
Oeu026180.1 Olea europaea HOM05D002744 ORTHO05D008989 8.3e-47 191.0 135 71.1
Hma1.2p1_1240F.1_g269630 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 1.1e-46 190.7 133 71.4
EL10Ac2g04295 Beta vulgaris HOM05D002744 ORTHO05D008989 1.8e-46 189.9 144 67.4
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.2e-46 189.1 206 50.0
HPP92_013966 Vanilla planifolia HOM05D002744 ORTHO05D008989 5.4e-46 188.3 174 58.6
ATR0681G046 Amborella trichopoda HOM05D000826 ORTHO05D008989 2.7e-45 186.0 183 56.8
Lj1A963T49 Lonicera japonica HOM05D002744 ORTHO05D008989 2.7e-45 186.0 111 80.2
Lsat_1_v5_gn_8_13401 Lactuca sativa HOM05D002744 ORTHO05D008989 4.6e-45 185.3 159 60.4
SGA_v2.0_scaffold36G14267 Striga asiatica HOM05D002744 ORTHO05D008989 6.6e-44 181.4 181 56.4
CDE02G4284 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 8.6e-44 181.0 132 67.4
VMungo1383G3724 Vigna mungo HOM05D002744 ORTHO05D008989 1.1e-43 180.6 161 58.4
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 5.6e-43 178.3 123 72.4
unitig_32.g11706 Utricularia gibba HOM05D002744 ORTHO05D008989 6.2e-42 174.9 178 52.8
unitig_33.g30211 Utricularia gibba HOM05D002744 ORTHO05D008989 6.2e-42 174.9 178 52.8
SEGI_09795 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 2.2e-39 166.4 186 48.9
Prupe.2G259500 Prunus persica HOM05D002744 ORTHO05D008989 3.3e-35 152.5 128 63.3
ClCG07G004800 Citrullus lanatus HOM05D002744 ORTHO05D008989 2.8e-34 149.4 195 47.2
Solyc02g076790.4 Solanum lycopersicum HOM05D002744 ORTHO05D008989 4.7e-34 148.7 126 63.5
PGSC0003DMG400010239 Solanum tuberosum HOM05D002744 ORTHO05D008989 4.7e-34 148.7 126 64.3
TAR623G0678 Trochodendron aralioides HOM05D002744 ORTHO05D008989 5.2e-33 145.2 113 69.9
SEGI_38813 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 4.4e-32 142.1 107 62.6
MELO3C020107.2 Cucumis melo HOM05D002744 ORTHO05D008989 3.2e-30 136.0 194 39.7
Psat5g130160 Pisum sativum HOM05D002744 ORTHO05D008989 3.5e-29 132.5 102 63.7
Gohir.A10G240750 Gossypium hirsutum HOM05D002744 ORTHO05D008989 6.0e-29 131.7 125 56.0
Sc10g0002800 Simmondsia chinensis HOM05D002744 ORTHO05D008989 1.7e-28 130.2 131 55.0
Mapoly0001s0439 Marchantia polymorpha HOM05D002744 ORTHO05D008989 6.8e-25 118.2 162 42.6
Hma1.2p1_0322F.1_g124790 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 6.6e-20 101.7 147 40.1
CDE01G0559 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 3.3e-19 99.4 146 40.4
C06p23580 Brassica napus HOM05D002744 ORTHO05D008989 2.4e-17 93.2 62 71.0
Pp3c8_1670 Physcomitrium patens HOM05D002744 ORTHO05D008989 1.2e-16 90.9 98 45.9
Psat5g125520 Pisum sativum HOM05D002744 ORTHO05D008989 3.9e-12 75.9 61 60.7
SMO147G0318 Selaginella moellendorffii HOM05D002744 ORTHO05D008989 2.8e-10 69.7 103 38.8


User provided reference genes

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