Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G55690 Arabidopsis thaliana HOM05D010817 ORTHO05D000721 7.2e-151 537.3 294 100.0
AL5G36940 Arabidopsis lyrata HOM05D010817 ORTHO05D000721 2.0e-121 439.5 294 86.7
Carub.0005s2246 Capsella rubella HOM05D010817 ORTHO05D000721 3.3e-103 379.0 308 68.2
CARHR165790 Cardamine hirsuta HOM05D010817 ORTHO05D000721 6.8e-77 291.6 312 57.7
Thhalv10010589m.g Eutrema salsugineum HOM05D010817 ORTHO05D000721 1.4e-61 240.7 312 60.3
Sp5g06770 Schrenkiella parvula HOM05D010817 ORTHO05D000721 4.2e-58 229.2 303 60.4
BcaC08g44747 Brassica carinata HOM05D010817 ORTHO05D000721 4.2e-42 176.0 289 47.1
C06p22860 Brassica napus HOM05D010817 ORTHO05D000721 4.2e-42 176.0 289 47.1
BraA07t29934Z Brassica rapa HOM05D010817 ORTHO05D000721 1.6e-41 174.1 285 47.0
BcaB02g07676 Brassica carinata HOM05D010817 ORTHO05D000721 1.0e-40 171.4 297 44.1
BolC6t37484H Brassica oleracea HOM05D010817 ORTHO05D000721 1.3e-40 171.0 284 45.1
BcaB02g08403 Brassica carinata HOM05D010817 ORTHO05D000721 4.3e-39 166.0 325 42.2
A04p04300 Brassica napus HOM05D010817 ORTHO05D000721 1.3e-38 164.5 335 40.9
A07p22570 Brassica napus HOM05D010817 ORTHO05D000721 1.3e-38 164.5 263 46.8
Aa31LG10G10690 Aethionema arabicum HOM05D010817 ORTHO05D000721 9.0e-37 158.3 272 41.9
BraA04t16141Z Brassica rapa HOM05D010817 ORTHO05D000721 7.6e-36 155.2 335 38.5
THA.LOC104810062 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 2.2e-30 137.1 343 34.4
BolC4t25132H Brassica oleracea HOM05D010817 ORTHO05D000721 2.4e-29 133.7 359 40.4
THA.LOC104809429 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 3.1e-29 133.3 341 32.3
BcaC02g09784 Brassica carinata HOM05D010817 ORTHO05D000721 6.9e-29 132.1 359 40.1
C04p36650 Brassica napus HOM05D010817 ORTHO05D000721 6.9e-29 132.1 359 40.1
THA.LOC104824295 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 1.0e-27 128.3 341 31.7
CARHR134790 Cardamine hirsuta HOM05D012316 ORTHO05D000721 8.2e-22 108.6 337 32.6
Aa31LG5G19750 Aethionema arabicum HOM05D001128 ORTHO05D000721 1.4e-21 107.8 354 31.4
Carub.0004s2199 Capsella rubella HOM05D012316 ORTHO05D000721 1.3e-19 101.3 341 31.1
Cpa.g.sc19.247 Carica papaya HOM05D001128 ORTHO05D000721 5.0e-19 99.4 334 30.5
BraA04t18487Z Brassica rapa HOM05D012316 ORTHO05D000721 2.5e-18 97.1 264 36.0
BolC4t28264H Brassica oleracea HOM05D012316 ORTHO05D000721 7.2e-18 95.5 256 37.1
Sp4g22160 Schrenkiella parvula HOM05D012316 ORTHO05D000721 7.2e-18 95.5 284 33.8
AL4G37440 Arabidopsis lyrata HOM05D012316 ORTHO05D000721 1.0e-16 91.7 344 31.7
Prupe.2G243200 Prunus persica HOM05D001128 ORTHO05D000721 1.1e-15 88.2 342 30.1
BcaC02g12120 Brassica carinata HOM05D012316 ORTHO05D000721 2.6e-15 87.0 280 32.5
Gohir.D04G065500 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.3e-15 86.7 231 35.9
FAN06G2816 Fragaria x ananassa HOM05D001128 ORTHO05D000721 7.4e-15 85.5 247 36.0
AT2G39870 Arabidopsis thaliana HOM05D012316 ORTHO05D000721 1.3e-14 84.7 288 31.9
C04p07640 Brassica napus HOM05D012316 ORTHO05D000721 1.3e-14 84.7 278 31.7
C04p67650 Brassica napus HOM05D001949 ORTHO05D003065 1.3e-14 84.7 235 36.6
FAN01G1897 Fragaria x ananassa HOM05D001128 ORTHO05D000721 2.2e-14 84.0 252 35.7
BcaB02g09076 Brassica carinata HOM05D012316 ORTHO05D000721 2.8e-14 83.6 268 30.6
FvH4_7g23630 Fragaria vesca HOM05D001128 ORTHO05D000721 2.8e-14 83.6 247 35.6
FAN06G3577 Fragaria x ananassa HOM05D001128 ORTHO05D000721 2.8e-14 83.6 247 35.6
FAN10G3504 Fragaria x ananassa HOM05D001128 ORTHO05D000721 2.8e-14 83.6 245 35.1
Gorai.012G073700 Gossypium raimondii HOM05D001128 ORTHO05D000721 3.7e-14 83.2 231 35.5
A04p30210 Brassica napus HOM05D001949 ORTHO05D003065 4.8e-14 82.8 188 40.4
Gohir.A05G346700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.4e-13 81.3 231 35.1
BolC4t22380H Brassica oleracea HOM05D012316 ORTHO05D000721 1.8e-13 80.9 279 31.2
Thecc.10G030500 Theobroma cacao HOM05D001128 ORTHO05D000721 1.8e-13 80.9 344 29.1
Thhalv10017947m.g Eutrema salsugineum HOM05D012316 ORTHO05D000721 3.1e-13 80.1 327 30.0
A05p06540 Brassica napus HOM05D012316 ORTHO05D000721 5.3e-13 79.3 281 30.2
QL08p062120 Quercus lobata HOM05D001128 ORTHO05D000721 5.3e-13 79.3 348 29.3
BraA05t19623Z Brassica rapa HOM05D012316 ORTHO05D000721 9.1e-13 78.6 339 33.9
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 9.1e-13 78.6 252 34.1
FAN03G2145 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.2e-12 78.2 242 34.7
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 4.5e-12 76.3 258 33.3
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 5.9e-12 75.9 258 33.7
RcHm_v2.0_Chr1g0368901 Rosa chinensis HOM05D001128 ORTHO05D000721 7.7e-12 75.5 261 32.6
MD01G1142200 Malus domestica HOM05D001128 ORTHO05D000721 2.9e-11 73.6 335 30.1
Duzib128G2050 Durio zibethinus HOM05D001128 ORTHO05D000721 1.1e-10 71.6 264 29.2
COL.COLO4_25581 Corchorus olitorius HOM05D001128 ORTHO05D000721 1.9e-10 70.9 123 46.3
Haze_17155 Corylus avellana HOM05D001128 ORTHO05D000721 3.2e-10 70.1 345 27.0
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 1.6e-09 67.8 267 29.6
Potri.010G195800 Populus trichocarpa HOM05D001128 ORTHO05D000721 2.1e-09 67.4 268 29.9
Sabra10G0150300 Salix brachista HOM05D001128 ORTHO05D000721 6.1e-09 65.9 268 29.9
Atru.chr12.272 Acer truncatum HOM05D001128 ORTHO05D000721 1.4e-08 64.7 97 48.5
Cfa001394 Carpinus fangiana HOM05D001128 ORTHO05D000721 1.4e-08 64.7 345 26.1
MD07G1207900 Malus domestica HOM05D001128 ORTHO05D000721 1.4e-08 64.7 101 45.5
Dinv16282 Davidia involucrata HOM05D001128 ORTHO05D000721 3.0e-08 63.5 350 26.9
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 4.0e-08 63.2 325 28.0
Glyma.18G031800 Glycine max HOM05D001128 ORTHO05D000721 5.2e-08 62.8 245 29.8
Potri.008G062200 Populus trichocarpa HOM05D001128 ORTHO05D000721 5.2e-08 62.8 280 29.6
Migut.L01977 Erythranthe guttata HOM05D001128 ORTHO05D000721 1.2e-07 61.6 236 30.9
Lj1A946G35 Lonicera japonica HOM05D001128 ORTHO05D000721 4.4e-07 59.7 224 31.7
CsaV3_5G008580 Cucumis sativus L. HOM05D001128 ORTHO05D000721 7.5e-07 58.9 310 27.4
Dinv34448 Davidia involucrata HOM05D001128 ORTHO05D000721 7.5e-07 58.9 248 31.0
Ah.10g036830 Amaranthus hybridus HOM05D001128 ORTHO05D000721 9.7e-07 58.5 244 31.6
CiPaw.01G293700 Carya illinoinensis HOM05D001128 ORTHO05D000721 9.7e-07 58.5 119 41.2
CANSAT56G3374 Cannabis sativa HOM05D001128 ORTHO05D000721 1.3e-06 58.2 107 42.1
Duzib106G0526 Durio zibethinus HOM05D001128 ORTHO05D000721 1.3e-06 58.2 98 45.9
Ca_17132_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 2.2e-06 57.4 309 28.5
vmacro20201 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 2.2e-06 57.4 226 31.0
Actinidia02898 Actinidia chinensis HOM05D001128 ORTHO05D000721 3.7e-06 56.6 272 26.8
CSS0030928 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 4.8e-06 56.2 265 29.1
Lj1A945T19 Lonicera japonica HOM05D001128 ORTHO05D000721 6.3e-06 55.8 129 38.8
Sabra08G0045800 Salix brachista HOM05D001128 ORTHO05D000721 6.3e-06 55.8 274 28.8
SalBow1G2079 Salvia bowleyana HOM05D001128 ORTHO05D000721 6.3e-06 55.8 325 28.0
arahy.Tifrunner.gnm1.ann1.U326PE Arachis hypogaea HOM05D001128 ORTHO05D000721 8.2e-06 55.5 260 28.5
Manes.07G123000 Manihot esculenta HOM05D001128 ORTHO05D000721 8.2e-06 55.5 278 28.4


User provided reference genes

Program Settings