Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 1.4e-111 406.4 217 100.0
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 6.5e-109 397.5 217 97.7
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 2.8e-104 382.1 217 93.1
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 3.7e-104 381.7 217 92.6
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 9.1e-103 377.1 217 90.3
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 9.1e-103 377.1 217 90.3
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.0e-102 375.9 217 89.4
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 3.5e-102 375.2 199 95.5
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.5e-102 374.8 217 89.4
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.7e-101 372.9 217 88.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 8.5e-101 370.5 217 88.9
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.5e-100 369.8 220 89.1
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.7e-99 365.5 220 88.2
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 3.0e-98 362.1 219 86.8
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 3.0e-98 362.1 220 88.6
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 3.0e-98 362.1 220 88.6
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 3.0e-98 362.1 220 88.6
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.5e-89 333.2 211 83.4
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.6e-83 313.2 177 94.4
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.1e-82 308.9 205 79.0
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 2.0e-81 306.2 207 83.1
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 3.3e-76 288.9 181 89.0
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 7.3e-76 287.7 206 74.3
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.2e-75 284.6 199 74.4
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 8.1e-75 284.3 222 68.0
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.1e-74 282.3 229 69.4
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 6.8e-74 281.2 205 70.7
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.2e-73 280.4 205 70.7
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.2e-73 280.4 205 69.8
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.4e-73 278.9 205 71.2
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 7.5e-73 277.7 230 64.8
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 9.8e-73 277.3 203 69.5
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.7e-72 276.6 207 70.5
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.2e-72 276.2 207 70.0
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.2e-72 276.2 207 70.0
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 2.2e-72 276.2 209 70.3
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.7e-72 275.4 208 69.2
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.7e-72 275.4 232 64.7
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 6.4e-72 274.6 215 68.4
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 6.4e-72 274.6 215 68.4
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 6.4e-72 274.6 208 69.2
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.4e-72 274.6 208 69.2
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.4e-72 274.6 208 69.2
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.4e-72 274.6 208 69.2
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 8.3e-72 274.2 205 69.8
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 8.3e-72 274.2 200 70.5
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.1e-71 273.9 204 69.6
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.1e-71 273.9 208 69.7
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.1e-71 273.9 210 69.0
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.9e-71 273.1 207 69.6
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.9e-71 273.1 203 69.5
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 2.4e-71 272.7 230 62.6
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 2.4e-71 272.7 212 65.6
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 2.4e-71 272.7 208 68.8
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 3.2e-71 272.3 208 68.3
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.2e-71 272.3 213 67.1
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.1e-71 271.9 203 69.5
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 5.4e-71 271.6 211 67.3
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 5.4e-71 271.6 204 68.6
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 9.2e-71 270.8 205 67.8
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.2e-70 270.4 206 69.4
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.2e-70 270.4 203 69.5
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.2e-70 270.4 210 67.1
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.2e-70 270.4 198 69.7
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.6e-70 270.0 208 67.3
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.1e-70 269.6 204 68.1
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 2.1e-70 269.6 205 69.3
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.1e-70 269.6 204 69.6
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.7e-70 269.2 196 71.9
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 4.6e-70 268.5 216 65.3
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 6.0e-70 268.1 204 68.1
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 6.0e-70 268.1 203 68.5
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 6.0e-70 268.1 203 68.0
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 6.0e-70 268.1 200 70.5
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 6.0e-70 268.1 208 67.3
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 7.8e-70 267.7 205 67.3
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 7.8e-70 267.7 205 67.3
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 7.8e-70 267.7 207 67.1
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.0e-69 267.3 196 71.4
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.0e-69 267.3 192 72.4
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.7e-69 266.5 206 66.5
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.7e-69 266.5 211 66.4
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.7e-69 266.5 203 67.0
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.3e-69 266.2 205 66.8
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.3e-69 266.2 200 70.0
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 3.0e-69 265.8 237 65.0
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 3.0e-69 265.8 209 66.5
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 5.1e-69 265.0 207 67.6
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 5.1e-69 265.0 212 64.6
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 8.6e-69 264.2 206 68.0
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 8.6e-69 264.2 207 65.7
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.1e-68 263.8 203 67.5
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.1e-68 263.8 206 68.0
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.5e-68 263.5 213 66.7
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.9e-68 263.1 211 66.4
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.3e-68 262.3 204 65.7
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 4.3e-68 261.9 223 68.2
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 9.5e-68 260.8 208 66.3
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.2e-67 260.4 209 65.6
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.6e-67 260.0 199 68.3
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.6e-67 260.0 206 65.5
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 2.1e-67 259.6 205 65.9
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 2.8e-67 259.2 202 68.3
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.6e-67 258.8 235 63.8
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 4.7e-67 258.5 199 66.3
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 4.0e-66 255.4 216 63.4
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 8.9e-66 254.2 210 63.3
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 4.4e-65 251.9 195 65.1
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.7e-64 250.0 223 59.2
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.9e-64 249.2 208 61.5
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.9e-64 249.2 198 66.7
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.8e-64 248.8 208 63.5
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 8.4e-64 247.7 215 63.7
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 8.4e-64 247.7 203 62.6
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.4e-63 246.9 196 65.8
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 1.9e-63 246.5 215 63.3
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 2.4e-63 246.1 198 62.6
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 6.0e-62 241.5 199 64.8
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.3e-61 239.6 189 64.0
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.1e-60 237.3 195 65.6
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.3e-60 235.7 197 61.9
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 4.3e-60 235.3 195 65.1
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 8.1e-59 231.1 192 60.9
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.5e-57 226.9 192 62.0
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.9e-56 222.6 195 60.5
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.3e-52 208.8 203 53.7
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 5.6e-52 208.4 148 70.3
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.6e-49 199.5 171 60.2
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 4.2e-47 192.2 209 55.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 3.0e-45 186.0 213 52.6
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 3.8e-40 169.1 125 68.8
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.6e-38 163.7 126 65.1
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.3e-36 155.6 192 49.0
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 3.7e-35 152.5 123 65.0
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 3.7e-35 152.5 196 47.4
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.1e-34 151.0 102 71.6
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 6.9e-34 148.3 114 64.0
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 3.8e-32 142.5 95 71.6
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 2.1e-14 83.6 66 66.7
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 2.6e-12 76.6 62 61.3
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.1e-06 57.0 173 28.9
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.7e-06 56.6 170 28.2


User provided reference genes

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