Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.5e-139 499.6 258 100.0
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.2e-130 469.9 258 95.0
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 2.4e-118 429.1 258 89.1
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.9e-115 419.5 262 85.1
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.1e-114 416.0 261 84.3
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 8.0e-114 414.1 262 84.7
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 2.9e-111 405.6 265 83.0
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.9e-111 405.6 262 82.4
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 6.3e-111 404.4 262 82.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.1e-110 403.7 259 82.2
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.4e-110 403.3 259 82.2
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 9.2e-110 400.6 259 81.5
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 5.9e-109 397.9 260 81.5
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 7.8e-109 397.5 260 81.5
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.5e-107 392.5 259 81.9
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 3.3e-107 392.1 278 76.6
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 5.6e-107 391.3 260 81.9
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 7.3e-107 391.0 262 80.9
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.0e-102 374.4 264 76.5
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 6.0e-101 371.3 256 77.0
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.5e-99 366.7 260 77.7
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 2.8e-98 362.5 263 73.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 8.1e-98 360.9 261 73.6
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.0e-97 358.6 234 82.5
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 6.8e-97 357.8 261 74.3
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.2e-96 357.1 264 71.6
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.5e-96 356.7 259 74.5
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 2.0e-96 356.3 263 72.2
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 2.6e-96 355.9 259 71.8
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.4e-96 355.5 259 72.2
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 4.4e-96 355.1 264 71.6
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 5.8e-96 354.8 264 70.8
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.3e-95 353.6 264 71.2
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.3e-95 353.6 258 72.1
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 2.2e-95 352.8 261 74.7
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.2e-95 352.8 261 71.3
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 2.9e-95 352.4 264 71.2
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.9e-95 352.4 249 75.1
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 6.4e-95 351.3 258 72.5
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 8.3e-95 350.9 260 74.6
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.1e-94 350.5 264 71.2
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.1e-94 350.5 264 70.5
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.1e-94 350.5 256 71.5
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.4e-94 350.1 259 72.6
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 3.2e-94 349.0 258 71.7
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 4.1e-94 348.6 259 71.8
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.4e-94 348.2 259 70.7
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 5.4e-94 348.2 260 72.3
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 7.1e-94 347.8 260 69.6
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 9.2e-94 347.4 265 70.2
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 9.2e-94 347.4 248 73.4
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 9.2e-94 347.4 259 70.7
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.2e-93 347.1 259 71.8
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.6e-93 346.7 264 69.3
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 2.1e-93 346.3 261 71.3
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.7e-93 345.9 260 70.0
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 2.7e-93 345.9 264 69.7
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.0e-92 344.0 260 69.6
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.0e-92 344.0 260 70.8
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.0e-92 344.0 263 71.1
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.0e-92 344.0 263 70.3
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.0e-92 344.0 263 70.3
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.3e-92 343.6 264 68.6
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.3e-92 343.6 263 70.7
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.3e-92 343.6 259 69.9
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.3e-92 343.6 266 70.3
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 2.3e-92 342.8 259 69.1
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 2.3e-92 342.8 261 69.0
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 5.1e-92 341.7 264 71.6
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.1e-91 340.5 264 69.3
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.1e-91 340.5 256 70.3
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.1e-91 340.5 261 69.7
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.5e-91 340.1 249 71.9
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 1.9e-91 339.7 264 68.9
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.9e-91 339.7 264 68.9
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.5e-91 339.3 260 69.6
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 2.5e-91 339.3 263 69.2
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 3.3e-91 339.0 264 69.3
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 4.3e-91 338.6 260 68.8
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.3e-91 338.6 260 69.6
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 4.3e-91 338.6 259 68.0
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 5.6e-91 338.2 260 72.3
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.6e-91 338.2 263 69.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 5.6e-91 338.2 264 69.3
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 5.6e-91 338.2 261 69.3
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 7.3e-91 337.8 263 67.7
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.3e-91 337.8 261 69.7
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 7.3e-91 337.8 264 68.2
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 9.5e-91 337.4 250 71.6
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.2e-90 337.0 263 70.0
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.6e-90 336.7 264 67.8
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.6e-90 336.7 260 69.2
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.1e-90 336.3 283 65.0
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.1e-90 336.3 264 68.9
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.1e-90 336.3 261 67.8
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 3.6e-90 335.5 261 68.6
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 3.6e-90 335.5 264 69.3
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.7e-90 335.1 264 68.6
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 6.2e-90 334.7 264 68.2
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.2e-90 334.7 264 68.2
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 6.2e-90 334.7 263 68.8
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 8.1e-90 334.3 257 68.9
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.4e-89 333.6 250 70.8
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 2.3e-89 332.8 264 67.4
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 2.3e-89 332.8 261 68.6
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 3.1e-89 332.4 254 70.1
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 4.0e-89 332.0 262 67.2
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.2e-89 331.6 259 68.7
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 8.9e-89 330.9 263 68.4
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 8.9e-89 330.9 257 68.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.2e-88 330.5 262 66.8
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 2.0e-88 329.7 305 61.6
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 2.0e-88 329.7 265 67.5
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.6e-88 329.3 271 67.5
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 9.9e-88 327.4 270 67.0
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.7e-87 326.6 257 66.9
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 2.2e-87 326.2 252 68.7
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 6.4e-87 324.7 263 67.3
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.4e-86 323.6 252 67.9
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 4.1e-86 322.0 258 67.4
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 9.2e-86 320.9 261 67.4
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 3.5e-85 318.9 278 63.3
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.5e-85 318.9 284 62.7
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.7e-84 316.6 266 65.8
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 2.3e-84 316.2 257 66.9
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.3e-83 312.0 260 65.4
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 7.3e-83 311.2 264 62.9
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 9.6e-83 310.8 256 65.6
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 1.2e-82 310.5 256 66.0
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.6e-82 310.1 258 65.5
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.8e-82 309.3 258 64.7
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.8e-82 309.3 258 64.7
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 4.7e-82 308.5 250 66.8
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.8e-81 306.6 260 63.8
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 2.0e-80 303.1 256 64.5
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.8e-79 298.9 265 63.0
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 6.4e-79 298.1 316 55.7
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 6.4e-79 298.1 265 61.1
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.4e-78 297.0 235 67.2
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 9.3e-78 294.3 265 62.3
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.2e-77 293.9 226 70.8
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 3.5e-77 292.4 256 64.1
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 5.6e-75 285.0 252 63.1
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 2.1e-74 283.1 235 63.0
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.4e-73 280.4 256 60.5
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 5.3e-73 278.5 206 72.8
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 2.9e-71 272.7 272 60.3
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.1e-70 270.8 197 73.6
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 3.3e-67 259.2 194 70.1
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.8e-66 255.4 144 86.8
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 4.0e-65 252.3 155 79.4
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 1.9e-38 163.7 197 50.8
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.9e-38 163.7 171 55.0
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.5e-38 163.3 263 41.4
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 4.6e-37 159.1 177 49.7
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.2e-30 136.3 92 73.9
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.4e-30 134.8 74 91.9
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 7.4e-27 125.2 78 79.5
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-25 119.8 229 37.6
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 7.0e-25 118.6 237 37.6
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.8e-20 104.0 117 57.3
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.4e-17 94.4 172 36.0
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 7.7e-16 88.6 117 41.0
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.2e-13 81.3 55 70.9
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 4.7e-13 79.3 99 49.5
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.7e-10 70.9 40 75.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 8.3e-10 68.6 43 69.8
BcaNung04651 Brassica carinata HOM05D034866 ORTHO05D039225 1.6e-08 64.3 107 45.8
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 2.0e-08 63.9 161 29.8
BolC1t01166H Brassica oleracea HOM05D003984 ORTHO05D033849 5.9e-08 62.4 41 78.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.9e-08 62.4 40 65.0
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 5.9e-08 62.4 101 39.6
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 7.7e-08 62.0 105 32.4
A09p62400 Brassica napus HOM05D000348 ORTHO05D013806 8.5e-07 58.5 40 70.0
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 1.5e-06 57.8 35 74.3
C06p30290 Brassica napus HOM05D021762 ORTHO05D013806 1.9e-06 57.4 34 76.5
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 3.2e-06 56.6 42 59.5
BraA07t29158Z Brassica rapa HOM05D021762 ORTHO05D013806 5.5e-06 55.8 34 76.5
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 5.5e-06 55.8 32 87.5


User provided reference genes

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