Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.3e-140 503.1 261 100.0
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 5.8e-136 487.6 261 97.3
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 2.4e-126 455.7 261 91.2
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.0e-121 438.3 261 88.1
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 3.4e-120 435.3 264 87.9
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 2.7e-117 425.6 261 85.4
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 3.5e-117 425.2 261 85.4
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.6e-117 424.9 261 87.0
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 7.8e-117 424.1 261 86.2
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 2.3e-116 422.5 261 84.7
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 6.6e-116 421.0 261 85.4
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.9e-115 419.5 262 84.7
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.6e-114 416.4 262 84.0
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 3.6e-114 415.2 280 80.4
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 5.3e-113 411.4 261 83.5
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.2e-112 410.2 262 84.7
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 2.3e-108 396.0 261 82.4
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.3e-108 396.0 261 80.8
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.3e-103 380.2 261 77.4
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.9e-102 376.3 261 78.2
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.6e-101 373.2 264 79.2
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.3e-100 369.4 262 74.4
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.9e-100 368.6 249 78.7
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.5e-99 366.7 264 74.2
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.5e-99 366.7 261 74.3
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 3.3e-99 365.5 259 76.1
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 5.6e-99 364.8 262 72.9
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.3e-98 363.6 261 74.3
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 2.8e-98 362.5 259 74.1
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 3.7e-98 362.1 261 73.2
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 4.8e-98 361.7 262 73.3
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 6.2e-98 361.3 262 72.5
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.4e-97 360.1 261 72.4
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.4e-97 359.4 261 74.3
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 3.1e-97 359.0 261 74.3
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.1e-97 359.0 259 73.0
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 3.1e-97 359.0 262 72.1
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 4.0e-97 358.6 262 72.1
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.0e-97 358.6 256 73.8
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 6.9e-97 357.8 262 72.9
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.5e-96 356.7 262 71.8
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.5e-96 356.7 262 71.8
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.0e-96 356.3 262 71.8
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 2.0e-96 356.3 261 73.2
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.6e-96 355.9 262 71.8
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 3.4e-96 355.5 262 71.8
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 4.5e-96 355.1 261 73.6
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 5.8e-96 354.8 261 72.4
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.0e-95 354.0 261 74.7
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.0e-95 354.0 262 71.8
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.0e-95 354.0 261 72.4
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.3e-95 353.6 263 71.1
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.3e-95 353.6 262 72.9
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 1.7e-95 353.2 262 71.4
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 2.2e-95 352.8 261 73.2
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.9e-95 352.4 284 67.6
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 2.9e-95 352.4 262 72.5
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.8e-95 352.1 262 71.4
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.9e-95 351.7 261 70.9
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 4.9e-95 351.7 261 70.5
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 6.5e-95 351.3 262 71.4
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 6.5e-95 351.3 261 72.4
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.1e-94 350.5 262 71.0
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.4e-94 350.1 263 72.6
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.4e-94 350.1 262 73.7
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.4e-94 350.1 261 70.1
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.9e-94 349.7 263 72.6
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.5e-94 349.4 261 72.4
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 2.5e-94 349.4 262 71.0
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 2.5e-94 349.4 261 72.4
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.2e-94 349.0 262 71.0
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.5e-94 348.2 238 79.8
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 9.3e-94 347.4 261 71.6
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.2e-93 347.1 262 72.1
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.2e-93 347.1 262 70.2
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 2.1e-93 346.3 262 70.2
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 2.7e-93 345.9 269 71.4
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.5e-93 345.5 261 72.0
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.5e-93 345.5 261 72.0
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 4.6e-93 345.1 250 73.6
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.9e-93 344.4 248 73.0
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 7.9e-93 344.4 262 70.2
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.0e-92 344.0 261 70.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.0e-92 344.0 264 68.9
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 2.3e-92 342.8 261 69.7
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 3.0e-92 342.4 261 72.4
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 5.1e-92 341.7 262 70.6
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 5.1e-92 341.7 262 70.6
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 5.1e-92 341.7 260 71.2
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 6.7e-92 341.3 262 70.6
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.7e-92 340.9 262 69.5
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 1.5e-91 340.1 262 72.1
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.9e-91 339.7 249 71.9
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.9e-91 339.7 262 69.1
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.9e-91 339.7 261 71.3
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.9e-91 339.7 262 70.6
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.5e-91 339.3 262 68.7
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 3.3e-91 339.0 262 68.7
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 4.3e-91 338.6 261 68.6
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 4.3e-91 338.6 263 70.7
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 9.6e-91 337.4 252 70.2
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.3e-90 337.0 261 69.3
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 4.8e-90 335.1 260 69.2
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 4.8e-90 335.1 262 69.1
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.8e-90 335.1 252 70.6
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.2e-90 334.3 250 71.6
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.1e-89 334.0 258 70.2
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.1e-89 334.0 261 70.1
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.1e-89 334.0 257 68.9
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.8e-89 333.2 263 68.4
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.8e-89 333.2 265 70.2
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 3.1e-89 332.4 254 70.9
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 3.1e-89 332.4 263 70.0
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 4.1e-89 332.0 263 69.6
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 5.3e-89 331.6 257 69.3
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.5e-88 330.1 261 70.5
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.0e-88 329.7 269 68.8
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 2.6e-88 329.3 263 68.1
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 2.6e-88 329.3 258 69.0
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 7.6e-88 327.8 257 67.7
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 2.9e-87 325.9 285 65.3
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.8e-87 325.5 263 67.3
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 1.1e-86 323.9 259 67.6
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 2.5e-86 322.8 260 68.1
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 5.5e-86 321.6 304 61.5
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.6e-85 320.1 249 69.1
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 5.1e-84 315.1 278 63.7
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.3e-83 312.4 257 65.4
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.3e-83 312.4 257 65.4
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 5.7e-83 311.6 263 65.8
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 7.4e-83 311.2 261 66.3
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 9.7e-83 310.8 261 66.3
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.3e-82 310.5 256 66.4
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 6.3e-82 308.1 264 65.5
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.4e-81 306.2 225 73.8
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 2.4e-81 306.2 257 65.8
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.5e-80 303.5 262 63.4
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 3.4e-80 302.4 233 69.5
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 3.4e-80 302.4 256 65.2
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 1.1e-78 297.4 312 55.8
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.6e-77 292.4 252 65.5
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 3.6e-77 292.4 264 61.7
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.0e-76 289.3 263 61.2
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 3.9e-76 288.9 235 65.5
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 4.8e-74 282.0 198 75.3
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.1e-73 280.8 261 59.8
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 6.9e-73 278.1 270 61.9
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 4.5e-72 275.4 205 73.2
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 8.8e-68 261.2 202 69.3
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.1e-65 251.1 144 85.4
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.0e-63 247.7 155 78.7
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.4e-41 173.3 167 57.5
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.8e-37 159.8 279 39.8
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 3.6e-37 159.5 213 49.8
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 5.7e-35 152.1 205 47.3
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-28 130.2 74 89.2
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 8.9e-28 128.3 243 37.9
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.2e-27 127.9 93 71.0
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.9e-26 123.2 78 78.2
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 7.0e-25 118.6 107 70.1
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-23 112.1 267 34.8
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 5.8e-19 99.0 173 39.3
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.2e-17 93.2 103 56.3
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 5.6e-14 82.4 125 38.4
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.2e-11 74.7 50 72.0
BolC1t01166H Brassica oleracea HOM05D003984 ORTHO05D033849 2.0e-11 73.9 47 80.9
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.6e-11 73.6 40 77.5
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.2e-10 70.5 40 75.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 9.2e-09 65.1 40 70.0
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 6.0e-08 62.4 161 31.7
BraA09t38747Z Brassica rapa HOM05D003984 ORTHO05D033849 1.0e-07 61.6 67 59.7
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.3e-07 61.2 105 34.3
BcaNung04651 Brassica carinata HOM05D034866 ORTHO05D039225 1.7e-07 60.8 110 47.3
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.7e-07 60.8 42 61.9
BraA05t21530Z Brassica rapa HOM05D003984 ORTHO05D033849 3.9e-07 59.7 51 64.7
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 5.6e-06 55.8 106 43.4


User provided reference genes

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