Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 1.0e-203 713.4 406 100.0
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 4.2e-186 654.8 415 92.5
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 2.7e-180 635.6 398 92.5
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 7.8e-180 634.0 415 89.6
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 1.8e-176 622.9 408 89.5
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 3.4e-175 618.6 417 85.9
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.8e-173 612.8 430 84.2
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 4.1e-173 611.7 409 86.1
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 2.7e-172 609.0 407 85.5
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 2.7e-172 609.0 408 85.5
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 1.7e-171 606.3 410 85.1
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 9.5e-170 600.5 406 80.8
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.2e-169 600.1 399 77.7
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 4.1e-165 585.1 409 81.9
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 4.1e-165 585.1 409 81.9
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.2e-153 547.0 394 72.3
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 4.6e-148 528.5 394 70.1
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 6.9e-144 514.6 408 72.1
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 7.6e-135 484.6 398 63.3
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 3.8e-134 482.3 302 84.1
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 3.8e-134 482.3 302 84.1
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.2e-133 479.2 398 63.8
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 7.1e-133 478.0 398 63.6
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 7.1e-133 478.0 398 63.6
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.6e-132 476.9 394 62.9
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 1.0e-131 474.2 445 58.7
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 2.3e-131 473.0 458 58.1
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 3.0e-131 472.6 397 63.7
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 6.7e-131 471.5 405 62.5
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.5e-130 470.3 394 67.0
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 1.5e-130 470.3 405 62.5
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 2.5e-130 469.5 393 62.8
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 4.3e-130 468.8 399 62.9
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 1.3e-129 467.2 394 62.4
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.6e-129 466.8 394 71.1
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.6e-129 466.8 402 61.9
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.6e-129 466.8 395 61.3
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 2.8e-129 466.1 394 62.2
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 2.8e-129 466.1 396 62.1
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 3.7e-129 465.7 400 61.8
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 2.4e-128 463.0 398 62.1
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 2.4e-128 463.0 394 61.7
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 2.4e-128 463.0 405 61.5
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 3.1e-128 462.6 392 61.2
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 4.0e-128 462.2 332 69.9
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 5.3e-128 461.8 394 70.3
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 5.3e-128 461.8 394 62.9
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 9.0e-128 461.1 330 68.5
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 1.5e-127 460.3 405 60.7
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 2.0e-127 459.9 328 71.0
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 2.0e-127 459.9 391 62.4
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 7.6e-127 458.0 414 59.2
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 2.2e-126 456.4 396 62.9
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 2.2e-126 456.4 406 69.5
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 1.4e-125 453.8 401 59.9
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 1.9e-125 453.4 394 61.4
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 9.3e-125 451.1 395 59.7
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 9.3e-125 451.1 401 59.6
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.6e-124 450.3 393 62.3
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 2.1e-124 449.9 317 71.0
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 2.1e-124 449.9 320 69.4
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 3.5e-124 449.1 400 59.8
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 7.9e-124 448.0 387 62.0
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 2.5e-122 443.0 441 56.2
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 2.5e-122 443.0 429 57.3
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 7.4e-122 441.4 394 59.6
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 9.6e-122 441.0 405 59.0
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 4.8e-121 438.7 410 58.0
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 6.2e-121 438.3 385 61.0
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 8.2e-121 438.0 402 63.7
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.8e-120 436.8 441 55.6
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.5e-119 433.7 373 62.5
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 2.0e-119 433.3 394 59.1
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 4.5e-119 432.2 395 57.5
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.3e-118 430.6 413 59.1
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.7e-118 430.3 382 58.4
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 1.4e-117 427.2 440 54.3
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 4.2e-117 425.6 394 60.9
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 9.3e-117 424.5 342 62.3
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 3.5e-116 422.5 391 58.3
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 1.9e-114 416.8 373 58.2
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.7e-114 415.2 382 57.1
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 9.7e-114 414.5 332 63.6
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 1.3e-113 414.1 298 71.5
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.8e-113 412.9 334 63.2
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 2.8e-113 412.9 375 60.0
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 8.2e-113 411.4 367 69.8
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 8.2e-113 411.4 298 71.5
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 8.2e-113 411.4 394 56.9
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.4e-112 410.6 329 63.8
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 3.1e-112 409.5 327 63.6
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.2e-110 403.3 382 56.8
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 2.9e-110 402.9 412 54.6
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 8.5e-110 401.4 346 61.6
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 2.7e-108 396.4 331 62.5
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 3.7e-105 386.0 286 68.5
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 4.1e-104 382.5 338 60.4
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 9.1e-104 381.3 330 61.5
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 2.6e-103 379.8 394 52.8
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 2.2e-102 376.7 328 61.3
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 4.4e-98 362.5 394 50.5
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.7e-97 359.4 316 60.4
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.8e-97 359.0 316 60.1
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 4.8e-97 359.0 319 57.1
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 8.2e-97 358.2 316 60.1
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 8.2e-97 358.2 316 60.1
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 4.1e-96 355.9 327 57.2
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.5e-95 354.0 316 59.5
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 3.5e-95 352.8 316 57.3
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 6.5e-94 348.6 340 52.9
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 2.4e-88 330.1 270 62.2
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 7.0e-80 302.0 325 48.6
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 4.0e-75 286.2 253 58.9
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.5e-69 266.9 275 55.6
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 4.0e-67 259.6 281 50.9
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 4.4e-66 256.1 185 67.0
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.5e-63 246.5 253 52.2
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 1.2e-55 221.5 384 37.2
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.0e-54 218.4 256 48.8
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.6e-52 209.9 150 67.3
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 4.7e-52 209.5 149 72.5
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.1e-45 188.3 140 70.7
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.1e-44 184.1 129 72.9
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.3e-41 174.9 137 60.6
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 1.5e-37 161.4 126 65.1
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.2e-36 158.3 115 67.8
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 5.4e-24 116.3 80 70.0
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 5.3e-19 99.8 72 68.1
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 3.2e-16 90.5 150 39.3
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.4e-11 75.1 62 62.9
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 2.0e-10 71.2 349 21.8
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.7e-09 68.2 71 56.3
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 3.5e-07 60.5 58 53.4
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 7.9e-07 59.3 49 63.3


User provided reference genes

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