Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 6.4e-38 160.2 79 100.0
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 4.1e-37 157.5 79 98.7
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 6.6e-35 150.2 79 92.4
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 4.7e-33 144.1 79 87.3
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 4.4e-31 137.5 79 84.8
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 5.8e-31 137.1 79 82.3
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 9.9e-31 136.3 79 82.3
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 9.9e-31 136.3 79 82.3
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 9.9e-31 136.3 79 82.3
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 9.9e-31 136.3 79 83.5
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 9.9e-31 136.3 79 82.3
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 1.3e-30 136.0 79 82.3
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 1.3e-30 136.0 79 82.3
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 1.3e-30 136.0 79 82.3
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 1.3e-30 136.0 79 82.3
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 2.9e-30 134.8 79 82.3
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.9e-30 134.8 79 82.3
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.8e-30 134.4 79 82.3
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 3.8e-30 134.4 79 82.3
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 3.8e-30 134.4 79 82.3
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 3.8e-30 134.4 79 82.3
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 8.4e-30 133.3 79 86.1
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 2.4e-29 131.7 79 78.5
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.4e-29 131.7 79 81.0
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 4.6e-28 127.5 79 77.2
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 6.6e-27 123.6 79 75.9
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 8.7e-27 123.2 79 77.2
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.9e-26 122.1 79 78.5
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.3e-26 121.3 79 77.2
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 7.3e-26 120.2 79 74.7
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 1.6e-25 119.0 79 74.7
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 2.8e-25 118.2 79 75.9
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 8.1e-25 116.7 76 75.0
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 8.1e-25 116.7 79 74.7
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 1.4e-24 115.9 79 70.9
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 2.4e-24 115.2 79 72.2
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 3.1e-24 114.8 79 70.9
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 6.9e-24 113.6 79 72.2
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 9.0e-24 113.2 79 70.9
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.2e-23 112.8 79 69.6
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.0e-23 112.1 79 72.2
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.6e-23 111.7 79 70.9
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 3.4e-23 111.3 79 69.6
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 3.4e-23 111.3 79 69.6
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 3.4e-23 111.3 79 69.6
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 4.4e-23 110.9 79 68.4
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 4.4e-23 110.9 79 65.8
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.3e-22 109.4 79 70.9
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.3e-22 109.4 79 70.9
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.7e-22 109.0 79 69.6
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 2.9e-22 108.2 79 68.4
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 2.9e-22 108.2 78 69.2
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.4e-21 105.9 79 67.1
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.4e-21 105.9 79 67.1
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.4e-21 105.9 79 68.4
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 1.9e-21 105.5 79 67.1
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.9e-21 105.5 79 68.4
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 3.2e-21 104.8 79 62.0
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 3.2e-21 104.8 79 67.1
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 3.2e-21 104.8 83 66.3
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 3.2e-21 104.8 79 64.6
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 4.2e-21 104.4 79 69.6
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 4.2e-21 104.4 79 69.6
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 65.8
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 65.8
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 63.3
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 67.1
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 67.1
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 7.1e-21 103.6 79 65.8
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 7.1e-21 103.6 77 68.8
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 65.8
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 63.3
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 65.8
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 60.8
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 1.2e-20 102.8 79 65.8
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.2e-20 102.8 79 65.8
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 1.6e-20 102.4 79 64.6
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.6e-20 102.4 78 65.4
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 1.6e-20 102.4 79 65.8
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 1.6e-20 102.4 79 64.6
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 1.6e-20 102.4 79 64.6
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 1.6e-20 102.4 79 64.6
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 65.8
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 64.6
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 63.3
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 63.3
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 63.3
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 63.3
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 63.3
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 64.6
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 63.3
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 64.6
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 63.3
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 4.6e-20 100.9 78 64.1
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 4.6e-20 100.9 79 59.5
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.0e-20 100.5 79 63.3
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 6.0e-20 100.5 79 63.3
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 6.0e-20 100.5 79 64.6
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 6.0e-20 100.5 79 64.6
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 6.0e-20 100.5 79 64.6
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 62.0
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 63.3
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 63.3
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 62.0
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 62.0
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 63.3
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 64.6
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 63.3
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 64.6
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 62.0
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 62.0
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 65.8
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 63.3
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 63.3
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 64.6
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 62.0
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 62.0
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.7e-19 99.0 79 63.3
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.7e-19 99.0 79 63.3
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 1.7e-19 99.0 79 63.3
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.7e-19 99.0 79 60.8
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.3e-19 98.6 79 63.3
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 2.3e-19 98.6 79 62.0
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 3.0e-19 98.2 78 61.5
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 3.0e-19 98.2 79 62.0
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 3.9e-19 97.8 79 63.3
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 3.9e-19 97.8 79 63.3
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 3.9e-19 97.8 79 60.8
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 5.1e-19 97.4 79 62.0
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 5.1e-19 97.4 79 60.8
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 6.6e-19 97.1 79 62.0
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 6.6e-19 97.1 76 65.8
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 6.6e-19 97.1 79 60.8
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 8.7e-19 96.7 79 62.0
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 8.7e-19 96.7 79 57.0
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 8.7e-19 96.7 79 60.8
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 8.7e-19 96.7 79 59.5
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.5e-18 95.9 79 62.0
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.9e-18 95.5 75 61.3
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 2.5e-18 95.1 79 59.5
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 2.5e-18 95.1 79 60.8
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 3.3e-18 94.7 78 62.8
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 4.3e-18 94.4 79 59.5
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 4.3e-18 94.4 79 59.5
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 5.6e-18 94.0 79 58.2
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 7.3e-18 93.6 78 57.7
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 7.3e-18 93.6 79 59.5
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.3e-17 92.8 75 60.0
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.6e-17 92.4 76 59.2
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.8e-17 91.7 79 62.0
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 4.8e-17 90.9 63 74.6
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 6.2e-17 90.5 79 59.5
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 8.1e-17 90.1 79 57.0
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 2.4e-16 88.6 79 53.2
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 5.3e-16 87.4 77 54.5
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 9.0e-16 86.7 79 57.0
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 2.0e-15 85.5 74 59.5
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 9.9e-15 83.2 63 63.5
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 8.4e-14 80.1 48 75.0
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 1.9e-13 79.0 73 58.9
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.9e-13 79.0 80 53.8
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 5.4e-13 77.4 55 70.9
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 5.4e-13 77.4 76 50.0
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.6e-12 75.9 80 53.8
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.3e-11 72.0 57 63.2
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.3e-11 72.0 65 60.0
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 1.6e-09 65.9 72 45.8
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 3.7e-09 64.7 52 61.5
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 8.1e-09 63.5 50 58.0
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 1.8e-08 62.4 79 46.8
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 3.1e-08 61.6 80 45.0
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 4.0e-08 61.2 43 69.8
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 4.0e-08 61.2 80 42.5
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 1.5e-07 59.3 74 45.9
AL1G35910 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.3e-06 56.2 29 86.2
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.9e-06 55.1 42 66.7


User provided reference genes

Program Settings