Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 9.5e-232 806.6 443 100.0
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.6e-189 665.6 456 84.4
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 6.1e-154 548.1 453 70.2
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 7.5e-128 461.5 393 71.2
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.7e-122 442.2 456 61.2
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 6.2e-122 441.8 443 58.2
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 6.2e-122 441.8 435 65.7
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 5.2e-121 438.7 430 63.5
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 6.8e-121 438.3 433 62.8
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 4.4e-120 435.6 443 64.3
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 7.3e-115 418.3 458 58.1
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 8.1e-114 414.8 462 58.4
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.0e-112 410.2 459 58.4
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 8.9e-105 384.8 420 60.5
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 3.4e-104 382.9 458 56.1
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.9e-103 379.0 462 54.8
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 6.4e-95 352.1 418 54.3
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.5e-91 340.9 408 53.4
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.6e-90 337.4 414 52.4
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 2.8e-90 336.7 414 52.7
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 4.0e-89 332.8 403 52.9
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.5e-88 330.9 450 51.8
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 2.0e-88 330.5 413 54.2
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 2.4e-86 323.6 475 50.5
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 5.4e-86 322.4 444 47.7
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 3.0e-84 316.6 472 50.4
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 4.3e-83 312.8 465 50.1
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.1e-81 308.1 470 48.9
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 2.4e-81 307.0 482 47.1
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.9e-78 297.4 481 45.9
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 3.7e-74 283.1 477 45.7
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.8e-73 280.8 484 43.6
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.2e-72 278.1 484 43.4
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.7e-71 274.2 470 43.8
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 2.2e-71 273.9 471 45.2
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 2.2e-71 273.9 478 45.4
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 5.0e-71 272.7 476 46.4
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.4e-70 271.2 478 43.3
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.4e-70 271.2 470 43.2
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 9.3e-70 268.5 484 43.0
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.6e-69 267.7 476 44.1
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.0e-68 265.0 477 42.1
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 3.3e-67 260.0 473 41.6
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 9.7e-67 258.5 478 43.3
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.7e-66 256.5 427 45.0
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 4.8e-66 256.1 476 37.6
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 8.2e-66 255.4 474 43.9
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.1e-65 253.4 459 42.5
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.2e-64 251.5 458 41.5
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.0e-63 248.4 485 41.9
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.1e-62 245.0 476 40.8
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.1e-62 245.0 484 41.5
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 2.5e-62 243.8 475 43.2
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 4.2e-62 243.0 484 38.4
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 4.2e-62 243.0 480 41.2
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 4.2e-62 243.0 465 43.7
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.6e-61 239.6 456 40.6
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.0e-60 238.4 478 42.9
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.4e-60 238.0 461 38.4
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.4e-60 238.0 451 43.2
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.4e-60 238.0 476 42.6
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.8e-60 237.7 467 43.7
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.0e-60 236.9 483 41.0
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 3.3e-59 233.4 467 37.0
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 9.7e-59 231.9 479 37.0
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 9.7e-59 231.9 477 41.5
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.3e-58 231.5 473 37.2
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 6.3e-58 229.2 468 38.5
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 1.8e-57 227.6 472 40.0
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 2.4e-57 227.3 477 41.7
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.0e-56 224.2 469 41.4
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 2.6e-56 223.8 466 38.4
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 7.7e-56 222.2 444 41.0
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.2e-55 220.7 460 36.7
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 6.5e-55 219.2 478 40.8
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.1e-54 218.4 455 36.9
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.1e-54 218.4 458 40.8
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 2.3e-52 210.7 473 35.5
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.0e-52 210.3 474 39.7
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.9e-52 209.9 459 40.3
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.1e-51 208.4 485 37.5
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 2.0e-51 207.6 422 40.5
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 2.6e-51 207.2 478 36.0
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 4.4e-51 206.5 472 39.4
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 4.4e-51 206.5 480 36.9
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 5.7e-51 206.1 440 39.8
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 9.7e-51 205.3 463 36.5
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.3e-50 204.9 447 37.1
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.7e-50 204.5 415 42.4
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 3.7e-50 203.4 425 40.7
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 3.7e-50 203.4 449 37.9
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 3.7e-50 203.4 488 38.3
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 6.3e-50 202.6 443 37.7
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.4e-49 200.7 451 37.9
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.0e-48 197.6 460 36.5
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.0e-48 197.6 471 37.4
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 2.6e-48 197.2 448 34.8
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 2.6e-48 197.2 468 38.9
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 4.5e-48 196.4 459 40.5
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 7.7e-48 195.7 483 36.0
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 7.7e-48 195.7 441 38.8
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.0e-47 195.3 395 38.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 2.9e-47 193.7 471 35.7
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 8.5e-47 192.2 463 35.0
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 3.2e-46 190.3 333 40.5
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.6e-45 186.8 498 35.1
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 4.7e-45 186.4 477 36.7
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.4e-44 184.9 476 36.3
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-44 184.5 481 36.2
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.7e-44 182.6 481 36.0
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 6.7e-44 182.6 499 36.5
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.6e-43 180.6 473 36.8
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.6e-43 180.6 471 34.2
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.1e-41 173.3 463 33.9
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.6e-40 171.4 495 36.2
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 2.6e-40 170.6 468 33.5
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.0e-39 168.7 460 33.3
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 8.5e-39 165.6 367 36.8
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.5e-38 164.9 496 34.7
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.5e-38 164.9 407 33.7
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.2e-37 161.8 439 35.5
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 2.8e-34 150.6 473 32.1
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.7e-32 144.1 409 37.9
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 4.5e-32 143.3 403 33.3
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 7.7e-32 142.5 403 33.0
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.0e-31 142.1 441 35.4
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 5.0e-31 139.8 421 35.4
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 6.5e-31 139.4 403 32.8
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.6e-29 133.7 439 34.4
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 3.6e-29 133.7 445 31.7
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 7.5e-27 125.9 147 47.6
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 9.8e-27 125.6 389 32.4
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 2.4e-25 120.9 246 35.8
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.2e-24 118.6 333 33.6
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.2e-24 118.6 294 33.0
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 2.0e-24 117.9 333 33.9
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.9e-24 116.3 397 31.0
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.9e-24 116.3 400 31.0
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 7.7e-24 115.9 195 42.1
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 7.7e-24 115.9 345 33.3
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.7e-23 114.8 308 34.7
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.1e-22 112.1 147 47.6
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.1e-22 112.1 479 30.1
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 3.6e-21 107.1 309 34.6
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.0e-20 105.5 432 30.3
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.5e-19 101.7 318 31.8
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 9.8e-19 99.0 149 51.7
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.2e-16 92.0 58 75.9
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 3.5e-16 90.5 141 44.0
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 4.6e-16 90.1 195 30.8
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 5.9e-16 89.7 465 26.9
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 5.0e-15 86.7 200 39.5
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 2.5e-14 84.3 134 44.8
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 4.3e-14 83.6 99 43.4
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.0e-12 79.0 173 36.4
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 1.8e-12 78.2 59 62.7
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 1.8e-12 78.2 427 27.2
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.5e-11 75.1 305 27.5
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.8e-11 73.2 101 39.6
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.7e-10 71.6 134 32.8
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 6.4e-10 69.7 46 73.9
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.1e-09 68.9 107 39.3
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.9e-09 68.2 361 26.3
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 9.2e-09 65.9 100 40.0
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.2e-08 65.5 99 37.4
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 2.7e-08 64.3 460 23.7
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 1.0e-07 62.4 169 32.5
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 1.7e-07 61.6 190 28.4
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.1e-06 58.9 146 31.5
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.1e-06 58.9 144 34.7
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.5e-06 58.5 276 26.4


User provided reference genes

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