Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 6.8e-92 340.9 204 100.0
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 8.6e-79 297.4 210 82.9
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 4.9e-74 281.6 209 85.6
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 4.8e-69 265.0 213 80.8
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 1.3e-61 240.4 213 77.5
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 1.5e-51 206.8 212 72.2
BcaB01g00256 Brassica carinata HOM05D008508 ORTHO05D003325 1.7e-50 203.4 206 69.9
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 2.9e-50 202.6 204 59.8
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 5.5e-49 198.4 213 73.2
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 2.7e-48 196.1 211 72.5
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 3.5e-48 195.7 214 70.6
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 7.9e-48 194.5 217 70.5
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 1.0e-47 194.1 219 69.9
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 1.0e-47 194.1 219 69.9
BcaB02g07768 Brassica carinata HOM05D008508 ORTHO05D003325 1.6e-45 186.8 212 68.9
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 6.9e-44 181.4 206 53.4
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 2.2e-42 176.4 205 63.4
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 1.9e-41 173.3 204 57.4
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 1.9e-41 173.3 204 57.4
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 1.9e-41 173.3 204 57.4
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 4.2e-41 172.2 207 58.9
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 2.7e-40 169.5 206 61.7
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 2.7e-40 169.5 208 59.1
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 7.9e-40 167.9 207 58.9
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 1.8e-39 166.8 208 60.6
CARHR163580 Cardamine hirsuta HOM05D008508 ORTHO05D003325 2.3e-39 166.4 252 54.4
A03p20680 Brassica napus HOM05D008508 ORTHO05D003325 8.7e-39 164.5 206 55.8
BraA03t11309Z Brassica rapa HOM05D008508 ORTHO05D003325 8.7e-39 164.5 206 55.8
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 1.9e-38 163.3 205 59.5
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 3.3e-38 162.5 161 57.1
BolC4t28099H Brassica oleracea HOM05D008508 ORTHO05D003325 7.4e-38 161.4 205 56.6
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 3.7e-37 159.1 165 58.8
C04p65950 Brassica napus HOM05D008508 ORTHO05D003325 4.8e-37 158.7 205 56.1
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 1.1e-36 157.5 211 60.7
BraA05t19816Z Brassica rapa HOM05D008508 ORTHO05D003325 4.1e-36 155.6 206 59.2
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 6.9e-36 154.8 212 55.2
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 9.0e-36 154.5 206 60.2
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 9.0e-36 154.5 206 60.2
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 1.2e-35 154.1 206 59.7
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 3.4e-35 152.5 212 62.3
A05p08470 Brassica napus HOM05D008508 ORTHO05D003325 1.0e-34 151.0 206 57.8
BraA04t18340Z Brassica rapa HOM05D008508 ORTHO05D003325 1.3e-34 150.6 207 57.5
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 2.2e-34 149.8 212 61.8
A04p28630 Brassica napus HOM05D008508 ORTHO05D003325 1.6e-32 143.7 206 55.8
THA.LOC104806576 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 1.1e-20 104.4 144 48.6
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.6e-19 100.5 120 53.3
THA.LOC104824529 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 8.5e-18 94.7 113 48.7
BcaB01g00255 Brassica carinata HOM05D008508 ORTHO05D003325 2.3e-15 86.7 87 79.3
CARHR132130 Cardamine hirsuta HOM05D008508 ORTHO05D003325 4.4e-14 82.4 93 53.8
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 3.1e-12 76.3 113 45.1
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 9.1e-12 74.7 94 47.9
AL5G37360 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.6e-11 73.9 42 88.1
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 2.2e-10 70.1 98 41.8
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 5.0e-10 68.9 148 36.5
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 6.5e-10 68.6 79 53.2
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 6.5e-10 68.6 142 37.3
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 6.5e-10 68.6 134 38.1
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 1.5e-09 67.4 127 36.2
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 2.5e-09 66.6 126 39.7
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 2.5e-09 66.6 101 43.6
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 2.5e-09 66.6 101 43.6
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 3.2e-09 66.2 59 61.0
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 4.2e-09 65.9 127 37.8
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 5.5e-09 65.5 76 50.0
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 5.5e-09 65.5 101 43.6
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 7.2e-09 65.1 139 36.0
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 7.2e-09 65.1 94 42.6
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 9.4e-09 64.7 101 43.6
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 1.2e-08 64.3 59 59.3
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 2.1e-08 63.5 141 36.9
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 2.1e-08 63.5 96 39.6
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 2.1e-08 63.5 125 37.6
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 2.7e-08 63.2 133 35.3
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 2.7e-08 63.2 60 55.0
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.7e-08 63.2 127 37.0
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 2.7e-08 63.2 91 40.7
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 2.7e-08 63.2 97 39.2
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 4.7e-08 62.4 85 45.9
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 4.7e-08 62.4 137 35.8
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 4.7e-08 62.4 137 32.1
BcaC02g07532 Brassica carinata HOM05D008508 ORTHO05D003325 6.1e-08 62.0 81 50.6
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 6.1e-08 62.0 125 35.2
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 6.1e-08 62.0 74 50.0
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 6.1e-08 62.0 130 35.4
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 8.0e-08 61.6 52 65.4
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 8.0e-08 61.6 102 41.2
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 8.0e-08 61.6 161 34.2
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.0e-07 61.2 127 36.2
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 1.8e-07 60.5 133 34.6
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.8e-07 60.5 51 54.9
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.8e-07 60.5 51 54.9
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 1.8e-07 60.5 92 45.7
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 2.3e-07 60.1 84 44.0
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.3e-07 60.1 130 35.4
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 3.0e-07 59.7 133 36.1
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 3.0e-07 59.7 108 38.9
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 3.0e-07 59.7 96 38.5
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 4.0e-07 59.3 68 52.9
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 4.0e-07 59.3 77 45.5
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 5.2e-07 58.9 86 47.7
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 5.2e-07 58.9 113 37.2
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 5.2e-07 58.9 133 32.3
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 5.2e-07 58.9 97 44.3
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 5.2e-07 58.9 78 44.9
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 5.2e-07 58.9 58 53.4
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 6.8e-07 58.5 82 46.3
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 6.8e-07 58.5 125 37.6
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 6.8e-07 58.5 83 45.8
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 6.8e-07 58.5 68 51.5
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 6.8e-07 58.5 98 37.8
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 8.8e-07 58.2 92 40.2
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 8.8e-07 58.2 121 37.2
PSO648G0001 Papaver somniferum HOM05D004206 ORTHO05D003325 8.8e-07 58.2 48 56.2
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 8.8e-07 58.2 129 34.9
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 1.2e-06 57.8 51 58.8
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 1.2e-06 57.8 55 56.4
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 1.2e-06 57.8 159 28.9
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 1.2e-06 57.8 116 35.3
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 1.2e-06 57.8 82 46.3
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 1.5e-06 57.4 63 49.2
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.5e-06 57.4 61 50.8
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 2.0e-06 57.0 129 35.7
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 2.0e-06 57.0 91 40.7
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 2.6e-06 56.6 146 32.9
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 2.6e-06 56.6 57 56.1
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 2.6e-06 56.6 99 37.4
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 3.4e-06 56.2 64 45.3
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 3.4e-06 56.2 76 44.7
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 4.4e-06 55.8 139 33.1
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 4.4e-06 55.8 126 38.9
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 4.4e-06 55.8 69 49.3
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 4.4e-06 55.8 140 35.0
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 4.4e-06 55.8 142 31.0
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 5.7e-06 55.5 104 38.5
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 5.7e-06 55.5 99 36.4
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 5.7e-06 55.5 70 44.3
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 5.7e-06 55.5 116 37.9
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 7.5e-06 55.1 49 55.1
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 7.5e-06 55.1 75 44.0
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 9.8e-06 54.7 69 49.3
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 9.8e-06 54.7 168 29.2
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 9.8e-06 54.7 40 60.0


User provided reference genes

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