Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 7.2e-107 390.6 195 100.0
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 3.4e-101 371.7 195 97.4
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 2.9e-100 368.6 196 96.9
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 3.9e-97 358.2 195 93.3
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 7.4e-96 354.0 196 93.4
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.7e-95 352.8 195 92.8
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 7.2e-83 310.8 205 81.5
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 9.4e-83 310.5 196 84.2
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.3e-81 305.8 195 83.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.0e-80 302.8 196 82.1
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.8e-79 298.9 203 77.8
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.4e-78 295.8 199 81.4
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 3.1e-78 295.4 186 82.3
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 3.5e-77 292.0 197 80.7
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 3.5e-77 292.0 197 80.2
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 7.7e-77 290.8 196 80.6
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.7e-76 289.7 197 79.7
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 5.0e-76 288.1 198 79.8
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.1e-75 287.0 199 77.9
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.1e-75 287.0 198 77.8
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.1e-75 287.0 199 74.9
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.5e-75 286.6 197 78.2
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 4.3e-67 258.5 202 67.8
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 6.1e-66 254.6 193 67.4
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.2e-64 250.4 196 65.3
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.7e-63 246.5 196 63.8
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 4.9e-63 245.0 200 63.5
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 7.0e-62 241.1 200 64.5
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 4.6e-61 238.4 196 65.3
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 7.8e-61 237.7 209 59.8
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 7.8e-61 237.7 207 59.4
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 7.8e-61 237.7 207 62.8
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 7.8e-61 237.7 209 62.2
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.3e-60 236.9 207 61.4
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.3e-60 236.9 199 63.3
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.7e-60 236.5 201 63.2
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.7e-60 236.5 201 63.2
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.5e-59 233.4 217 59.9
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.9e-59 233.0 208 62.5
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 3.3e-59 232.3 217 59.0
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.3e-59 232.3 202 63.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.3e-59 232.3 201 63.2
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.5e-59 230.7 202 60.9
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 9.5e-59 230.7 202 60.9
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 9.5e-59 230.7 216 58.3
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.2e-58 230.3 199 62.3
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.1e-58 229.6 208 61.1
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.6e-58 228.8 202 60.9
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 6.2e-58 228.0 212 57.5
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.0e-58 227.6 191 63.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.1e-57 227.3 203 60.1
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.1e-57 227.3 200 62.0
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.1e-57 227.3 204 62.3
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.2e-57 224.9 204 60.3
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 8.9e-57 224.2 205 59.5
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.9e-57 224.2 205 59.5
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.5e-56 223.4 208 61.5
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.5e-56 223.4 190 63.2
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 7.5e-56 221.1 191 61.8
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.8e-56 220.7 191 61.8
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 1.7e-55 219.9 196 59.7
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 2.2e-55 219.5 203 61.6
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 3.7e-55 218.8 216 59.7
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 4.9e-55 218.4 198 57.1
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 8.3e-55 217.6 209 57.9
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.1e-54 217.2 198 58.6
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.4e-54 216.9 212 55.2
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.4e-54 216.9 213 57.7
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 3.5e-53 212.2 203 57.6
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 4.6e-53 211.8 203 54.7
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 4.6e-53 211.8 188 60.1
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 6.0e-53 211.5 205 55.6
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 7.8e-53 211.1 211 56.9
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.8e-53 211.1 209 56.9
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.0e-52 210.7 199 56.8
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.0e-52 210.7 212 55.7
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.7e-52 209.9 211 55.9
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.3e-52 209.5 206 58.7
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 5.0e-52 208.4 200 58.5
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 2.5e-51 206.1 228 52.2
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 9.5e-51 204.1 204 55.4
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.6e-50 203.4 213 54.0
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.6e-50 203.4 220 54.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.1e-50 203.0 213 55.4
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.8e-50 202.6 193 56.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 3.6e-50 202.2 216 53.2
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 3.6e-50 202.2 214 53.3
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 4.7e-50 201.8 196 55.6
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.2e-50 201.4 216 56.0
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.3e-49 199.5 220 49.1
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.3e-49 199.5 204 55.9
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.0e-49 198.7 229 49.3
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 4.0e-49 198.7 205 55.1
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 5.2e-49 198.4 202 51.5
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.8e-49 198.0 184 58.2
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 8.9e-49 197.6 212 52.8
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.2e-48 197.2 215 55.3
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.2e-48 197.2 213 52.1
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.5e-48 196.8 218 52.3
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.6e-48 196.1 204 52.5
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 7.5e-48 194.5 165 61.2
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.7e-47 193.4 199 53.8
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.9e-46 189.9 204 53.9
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.2e-46 189.1 194 52.6
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 4.1e-46 188.7 204 54.4
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 6.0e-45 184.9 205 49.3
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 7.8e-45 184.5 151 60.9
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.0e-44 182.6 157 58.0
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.1e-43 180.6 152 61.2
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.9e-43 179.9 210 51.4
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.8e-42 176.0 133 67.7
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.4e-41 172.9 214 45.3
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 9.9e-40 167.5 182 53.3
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.9e-39 166.0 200 46.0
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.9e-38 163.3 175 51.4
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 7.1e-38 161.4 215 47.0
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.6e-37 160.2 202 44.6
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.7e-37 159.5 175 50.3
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.7e-37 159.5 213 44.6
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 8.6e-36 154.5 191 43.5
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.1e-35 154.1 127 59.8
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.1e-33 147.5 184 45.1
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.2e-33 145.2 193 45.6
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 5.2e-33 145.2 170 48.2
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.0e-32 143.3 208 43.3
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 2.0e-32 143.3 222 38.7
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.3e-31 140.6 185 40.5
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.7e-31 140.2 119 63.0
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.1e-30 137.5 220 39.1
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.6e-29 133.7 138 52.2
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.1e-29 133.3 121 52.1
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.0e-29 131.7 187 43.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 6.6e-28 128.3 144 48.6
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.8e-26 122.9 125 45.6
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.8e-25 120.2 135 44.4
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.8e-25 120.2 173 38.7
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.1e-25 119.4 99 61.6
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 6.9e-25 118.2 199 38.7
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 9.0e-25 117.9 62 93.5
AT3G53342 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 2.6e-24 116.3 62 91.9
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.5e-24 115.5 171 42.1
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 5.8e-24 115.2 91 54.9
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.4e-22 110.5 122 54.9
AT1G55710 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 4.2e-22 109.0 62 87.1
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 5.4e-22 108.6 196 37.2
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.2e-21 107.5 122 54.1
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 3.9e-20 102.4 87 52.9
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 3.9e-20 102.4 133 39.1
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.6e-18 97.1 99 50.5
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 4.8e-18 95.5 73 71.2
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.4e-17 93.2 86 47.7
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-15 87.4 136 35.3
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-15 87.4 136 35.3
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 4.9e-15 85.5 70 70.0
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.1e-14 84.3 184 37.0
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 2.4e-14 83.2 115 47.0
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 5.5e-14 82.0 112 40.2
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.3e-12 77.4 112 48.2
C03p31080 Brassica napus HOM05D004429 ORTHO05D103234 6.7e-12 75.1 55 76.4
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 4.8e-10 68.9 166 34.9
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.1e-09 67.8 103 42.7
BcaC08g44641 Brassica carinata HOM05D004429 ORTHO05D021447 7.6e-08 61.6 39 82.1
Ah.00g000610 Amaranthus hybridus HOM05D004429 ORTHO05D005583 7.1e-06 55.1 70 45.7


User provided reference genes

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