Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 5.9e-110 402.1 480 100.0
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 2.7e-54 217.2 493 77.7
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 2.4e-47 194.1 474 65.4
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 1.8e-42 177.9 478 70.5
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 2.0e-41 174.5 491 71.3
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 1.9e-39 167.9 490 69.4
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 2.1e-38 164.5 486 69.8
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 7.6e-33 146.0 96 83.3
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 2.1e-30 137.9 108 71.3
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 2.1e-30 137.9 108 71.3
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 1.3e-29 135.2 108 70.4
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 7.3e-28 129.4 491 57.6
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 8.4e-24 115.9 489 65.8
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 3.5e-22 110.5 483 61.5
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 3.0e-21 107.5 479 63.7
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 5.6e-20 103.2 483 59.8
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 1.3e-19 102.1 477 58.5
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 2.8e-19 100.9 481 63.0
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 1.1e-18 99.0 482 63.3
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 2.4e-18 97.8 119 56.3
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 2.4e-18 97.8 119 56.3
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 3.1e-18 97.4 112 59.8
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 3.1e-18 97.4 469 56.9
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 2.0e-17 94.7 109 58.7
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 4.5e-17 93.6 109 58.7
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 5.8e-17 93.2 109 58.7
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 6.4e-16 89.7 94 63.8
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 6.4e-16 89.7 94 63.8
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 6.7e-13 79.7 481 47.6
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 3.3e-12 77.4 175 54.3
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 2.4e-10 71.2 120 40.8
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 2.4e-10 71.2 85 49.4
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 2.6e-09 67.8 89 46.1
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 2.6e-09 67.8 92 47.8
C04p11500 Brassica napus HOM05D006485 ORTHO05D006108 3.4e-09 67.4 60 65.0
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.6e-09 66.2 83 51.8
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.6e-09 66.2 83 51.8
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.0e-08 65.9 83 54.2
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.0e-08 65.9 83 54.2
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.0e-08 65.9 83 53.0
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.3e-08 65.5 83 53.0
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 1.3e-08 65.5 92 45.7
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 1.7e-08 65.1 90 44.4
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 1.7e-08 65.1 170 31.8
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 1.7e-08 65.1 88 46.6
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 1.7e-08 65.1 126 39.7
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 2.2e-08 64.7 83 43.4
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 2.2e-08 64.7 104 43.3
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 2.2e-08 64.7 91 42.9
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 2.2e-08 64.7 88 43.2
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 2.9e-08 64.3 90 46.7
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 2.9e-08 64.3 104 41.3
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 2.9e-08 64.3 83 45.8
Nn6g35112 Nelumbo nucifera HOM05D006485 ORTHO05D006108 4.9e-08 63.5 128 37.5
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 6.5e-08 63.2 109 44.0
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 8.4e-08 62.8 115 41.7
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 1.1e-07 62.4 80 46.2
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 1.1e-07 62.4 123 43.9
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 1.1e-07 62.4 81 48.1
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 1.9e-07 61.6 82 47.6
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 2.5e-07 61.2 59 54.2
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 3.2e-07 60.8 84 45.2
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 4.2e-07 60.5 88 46.6
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 4.2e-07 60.5 87 48.3
Cfa016502 Carpinus fangiana HOM05D006485 ORTHO05D006108 5.5e-07 60.1 175 30.3
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 5.5e-07 60.1 113 38.9
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 5.5e-07 60.1 122 34.4
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 7.1e-07 59.7 86 45.3
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 7.1e-07 59.7 169 49.1
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 9.3e-07 59.3 171 31.0
GSVIVG01033739001 Vitis vinifera HOM05D006485 ORTHO05D006108 1.2e-06 58.9 65 47.7
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 1.6e-06 58.5 82 52.4
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 2.1e-06 58.2 112 38.4
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 2.7e-06 57.8 85 43.5
Nitab4.5_0006314g0010 Nicotiana tabacum HOM05D006485 ORTHO05D006108 2.7e-06 57.8 99 40.4
Peaxi162Scf00078g00039 Petunia axillaris HOM05D011389 ORTHO05D006108 2.7e-06 57.8 122 33.6
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 2.7e-06 57.8 101 37.6
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 6.0e-06 56.6 42 61.9
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 6.0e-06 56.6 78 46.2
SGA_v2.0_scaffold277G46722 Striga asiatica HOM05D006485 ORTHO05D006108 6.0e-06 56.6 76 47.4
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 7.9e-06 56.2 133 38.3


User provided reference genes

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