Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G52480 Arabidopsis thaliana HOM05D007532 ORTHO05D009483 2.4e-116 422.2 210 100.0
AL5G33190 Arabidopsis lyrata HOM05D007532 ORTHO05D009483 1.2e-102 376.7 210 90.5
Carub.0005s1887 Capsella rubella HOM05D007532 ORTHO05D009483 1.0e-87 327.0 214 80.8
BcaB01g00362 Brassica carinata HOM05D007532 ORTHO05D009483 7.5e-86 320.9 214 77.1
CARHR162250 Cardamine hirsuta HOM05D007532 ORTHO05D009483 2.9e-85 318.9 224 74.1
Thhalv10010711m.g Eutrema salsugineum HOM05D007532 ORTHO05D009483 2.9e-85 318.9 217 75.1
BcaC07g39613 Brassica carinata HOM05D007532 ORTHO05D009483 3.7e-85 318.5 209 77.0
BolC8t50392H Brassica oleracea HOM05D007532 ORTHO05D009483 3.7e-85 318.5 209 77.0
C08p27760 Brassica napus HOM05D007532 ORTHO05D009483 2.4e-84 315.8 209 76.6
A09p45610 Brassica napus HOM05D007532 ORTHO05D009483 2.3e-82 309.3 209 75.1
BraA09t40022Z Brassica rapa HOM05D007532 ORTHO05D009483 5.0e-82 308.1 209 74.6
Sp5g09820 Schrenkiella parvula HOM05D007532 ORTHO05D009483 1.7e-77 293.1 211 71.1
Aa31LG10G7530 Aethionema arabicum HOM05D007532 ORTHO05D009483 3.8e-53 212.2 214 60.3
Manes.09G046800 Manihot esculenta HOM05D007532 ORTHO05D009483 5.9e-22 108.6 216 38.9
Cpa.g.sc104.49 Carica papaya HOM05D007532 ORTHO05D009483 7.7e-22 108.2 223 39.0
COL.COLO4_29593 Corchorus olitorius HOM05D007532 ORTHO05D009483 8.5e-21 104.8 218 36.7
Thecc.05G102000 Theobroma cacao HOM05D007532 ORTHO05D009483 1.8e-18 97.1 201 36.3
Gohir.A09G135100 Gossypium hirsutum HOM05D007532 ORTHO05D009483 3.0e-18 96.3 200 36.0
Potri.016G071700 Populus trichocarpa HOM05D007532 ORTHO05D009483 3.3e-17 92.8 200 39.0
Gorai.006G150300 Gossypium raimondii HOM05D007532 ORTHO05D009483 4.3e-17 92.4 200 36.5
Gohir.D09G131700 Gossypium hirsutum HOM05D007532 ORTHO05D009483 5.7e-17 92.0 200 36.5
Cfa016678 Carpinus fangiana HOM05D007532 ORTHO05D009483 8.2e-16 88.2 200 36.0
TAR623G0884 Trochodendron aralioides HOM05D007532 ORTHO05D009483 8.2e-16 88.2 201 35.8
PGR004G2296 Punica granatum HOM05D007532 ORTHO05D009483 1.1e-15 87.8 218 36.7
Potri.006G204400 Populus trichocarpa HOM05D007532 ORTHO05D009483 2.4e-15 86.7 216 39.4
CANSAT64G0088 Cannabis sativa HOM05D007532 ORTHO05D009483 6.9e-15 85.1 214 31.8
Haze_19695 Corylus avellana HOM05D007532 ORTHO05D009483 2.6e-14 83.2 200 34.5
Atru.chr8.1383 Acer truncatum HOM05D007532 ORTHO05D009483 3.4e-14 82.8 205 33.2
TWI74G0748 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 1.0e-13 81.3 194 36.1
Sabra06G0157400 Salix brachista HOM05D007532 ORTHO05D009483 1.3e-13 80.9 217 34.6
Manes.08G032400 Manihot esculenta HOM05D007532 ORTHO05D009483 2.9e-13 79.7 206 33.0
Nn6g34736 Nelumbo nucifera HOM05D007532 ORTHO05D009483 8.5e-13 78.2 216 34.7
THA.LOC104824551 Tarenaya hassleriana HOM05D007532 ORTHO05D009483 8.5e-13 78.2 206 32.5
Duzib093G1477 Durio zibethinus HOM05D007532 ORTHO05D009483 1.1e-12 77.8 203 31.5
Duzib106G1076 Durio zibethinus HOM05D007532 ORTHO05D009483 1.1e-12 77.8 195 33.3
GSVIVG01033946001 Vitis vinifera HOM05D007532 ORTHO05D009483 1.1e-12 77.8 223 34.5
Duzib128G1100 Durio zibethinus HOM05D007532 ORTHO05D009483 2.5e-12 76.6 202 33.2
CiPaw.10G016200 Carya illinoinensis HOM05D007532 ORTHO05D009483 3.2e-12 76.3 203 36.5
Sabra16G0072100 Salix brachista HOM05D007532 ORTHO05D009483 5.5e-12 75.5 203 36.9
TWI77G0050 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 9.4e-12 74.7 186 34.9
THA.LOC104826804 Tarenaya hassleriana HOM05D014261 ORTHO05D016579 1.2e-11 74.3 207 32.9
Dinv31750 Davidia involucrata HOM05D010118 ORTHO05D009483 2.7e-11 73.2 198 36.4
MBI17_g22147_MAGBIO Magnolia biondii HOM05D007532 ORTHO05D009483 3.6e-11 72.8 191 36.1
Oeu045039.1 Olea europaea HOM05D007532 ORTHO05D009483 3.6e-11 72.8 214 30.4
PSO339G0695 Papaver somniferum HOM05D007532 ORTHO05D009483 3.6e-11 72.8 214 34.1
Sabra16G0073900 Salix brachista HOM05D007532 ORTHO05D009483 1.4e-10 70.9 203 36.5
PSO384G2238 Papaver somniferum HOM05D007532 ORTHO05D009483 2.3e-10 70.1 215 33.0
MSTRG.10404 Avicennia marina HOM05D007532 ORTHO05D009483 3.9e-10 69.3 206 31.6
Oeu035652.1 Olea europaea HOM05D007532 ORTHO05D009483 5.1e-10 68.9 212 33.0
Ciclev10012763m.g Citrus clementina HOM05D007532 ORTHO05D009483 8.8e-10 68.2 212 33.0
Nitab4.5_0006654g0010 Nicotiana tabacum HOM05D007532 ORTHO05D009483 1.1e-09 67.8 222 30.6
Actinidia32050 Actinidia chinensis HOM05D007532 ORTHO05D009483 2.6e-09 66.6 203 33.0
Nitab4.5_0000020g0210 Nicotiana tabacum HOM05D007532 ORTHO05D009483 9.7e-09 64.7 224 30.4
ClCG10G018450 Citrullus lanatus HOM05D007532 ORTHO05D009483 1.3e-08 64.3 198 31.3
QL07p037073 Quercus lobata HOM05D007532 ORTHO05D009483 3.7e-08 62.8 211 33.6
Phvul.007G269000 Phaseolus vulgaris HOM05D007532 ORTHO05D009483 4.8e-08 62.4 203 28.6
Lsat_1_v5_gn_2_55700 Lactuca sativa HOM05D007532 ORTHO05D009483 6.3e-08 62.0 208 30.3
Oeu055526.1 Olea europaea HOM05D007532 ORTHO05D009483 1.1e-07 61.2 202 27.2
SalBow5G5402 Salvia bowleyana HOM05D007532 ORTHO05D009483 1.8e-07 60.5 200 29.5
MELO3C009524.2 Cucumis melo HOM05D007532 ORTHO05D009483 7.0e-07 58.5 207 30.0
RcHm_v2.0_Chr3g0475571 Rosa chinensis HOM05D007532 ORTHO05D009483 7.0e-07 58.5 201 32.8
AL3G23190 Arabidopsis lyrata HOM05D014261 ORTHO05D016579 1.2e-06 57.8 208 29.8
FvH4_6g20110 Fragaria vesca HOM05D007532 ORTHO05D009483 1.2e-06 57.8 209 32.1
FAN14G5580 Fragaria x ananassa HOM05D007532 ORTHO05D009483 1.2e-06 57.8 209 32.1
DCAR_020715 Daucus carota HOM05D007532 ORTHO05D009483 4.5e-06 55.8 206 27.2
FAN05G0427 Fragaria x ananassa HOM05D007532 ORTHO05D009483 5.9e-06 55.5 190 31.1
Manes.07G114700 Manihot esculenta HOM05D002150 ORTHO05D002191 5.9e-06 55.5 206 29.6


User provided reference genes

Program Settings